Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28080

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_28065 and OKFHMN_28070 are separated by 15 nucleotidesOKFHMN_28070 and OKFHMN_28075 overlap by 19 nucleotidesOKFHMN_28075 and OKFHMN_28080 overlap by 8 nucleotidesOKFHMN_28080 and OKFHMN_28085 overlap by 4 nucleotidesOKFHMN_28085 and OKFHMN_28090 overlap by 1 nucleotides OKFHMN_28065: OKFHMN_28065 - Tail tube protein, at 5,386,148 to 5,386,888 _28065 OKFHMN_28070: OKFHMN_28070 - Phage minor tail protein, at 5,386,904 to 5,387,326 _28070 OKFHMN_28075: OKFHMN_28075 - phage tail assembly protein T, at 5,387,308 to 5,387,742 _28075 OKFHMN_28080: OKFHMN_28080 - phage tail tape measure protein, at 5,387,735 to 5,390,284 _28080 OKFHMN_28085: OKFHMN_28085 - Tail tip protein M, at 5,390,281 to 5,390,610 _28085 OKFHMN_28090: OKFHMN_28090 - phage minor tail protein L, at 5,390,610 to 5,391,308 _28090 Position (kb) 5387 5388 5389 5390 5391Strain fitness (log2 ratio) -3 -2 -1 0 1at 5387.234 kb on + strand, within OKFHMN_28070at 5387.517 kb on + strand, within OKFHMN_28075at 5387.690 kb on + strand, within OKFHMN_28075at 5387.927 kb on + strandat 5387.944 kb on + strandat 5387.944 kb on + strandat 5388.143 kb on + strand, within OKFHMN_28080at 5388.143 kb on + strand, within OKFHMN_28080at 5388.233 kb on - strand, within OKFHMN_28080at 5388.498 kb on - strand, within OKFHMN_28080at 5388.924 kb on - strand, within OKFHMN_28080at 5388.978 kb on - strand, within OKFHMN_28080at 5388.980 kb on - strand, within OKFHMN_28080at 5389.073 kb on + strand, within OKFHMN_28080at 5389.266 kb on + strand, within OKFHMN_28080at 5390.339 kb on + strand, within OKFHMN_28085at 5390.410 kb on + strand, within OKFHMN_28085at 5390.775 kb on + strand, within OKFHMN_28090at 5390.775 kb on + strand, within OKFHMN_28090

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,387,234 + OKFHMN_28070 0.78 +0.1
5,387,517 + OKFHMN_28075 0.48 -0.2
5,387,690 + OKFHMN_28075 0.88 +0.1
5,387,927 + +0.0
5,387,944 + +0.4
5,387,944 + +1.4
5,388,143 + OKFHMN_28080 0.16 -0.1
5,388,143 + OKFHMN_28080 0.16 +1.0
5,388,233 - OKFHMN_28080 0.20 -0.5
5,388,498 - OKFHMN_28080 0.30 -3.2
5,388,924 - OKFHMN_28080 0.47 +0.1
5,388,978 - OKFHMN_28080 0.49 +0.4
5,388,980 - OKFHMN_28080 0.49 +0.8
5,389,073 + OKFHMN_28080 0.52 -1.7
5,389,266 + OKFHMN_28080 0.60 -0.2
5,390,339 + OKFHMN_28085 0.18 +1.4
5,390,410 + OKFHMN_28085 0.39 -0.4
5,390,775 + OKFHMN_28090 0.24 +1.0
5,390,775 + OKFHMN_28090 0.24 +0.7

Or see this region's nucleotide sequence