Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27515

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdxY and gstA are separated by 43 nucleotidesgstA and dtpA are separated by 105 nucleotidesdtpA and OKFHMN_27520 are separated by 282 nucleotidesOKFHMN_27520 and nth are separated by 127 nucleotides OKFHMN_27505: pdxY - pyridoxal kinase PdxY, at 5,294,807 to 5,295,667 pdxY OKFHMN_27510: gstA - glutathione transferase GstA, at 5,295,711 to 5,296,316 gstA OKFHMN_27515: dtpA - dipeptide/tripeptide permease DtpA, at 5,296,422 to 5,297,924 dtpA OKFHMN_27520: OKFHMN_27520 - hypothetical protein, at 5,298,207 to 5,298,407 _27520 OKFHMN_27525: nth - endonuclease III, at 5,298,535 to 5,299,170 nth Position (kb) 5296 5297 5298Strain fitness (log2 ratio) -1 0 1 2at 5296.424 kb on - strandat 5296.619 kb on - strand, within dtpAat 5296.760 kb on - strand, within dtpAat 5296.890 kb on - strand, within dtpAat 5297.150 kb on + strand, within dtpAat 5297.504 kb on - strand, within dtpAat 5297.511 kb on - strand, within dtpAat 5297.579 kb on - strand, within dtpAat 5297.652 kb on - strand, within dtpAat 5297.652 kb on - strand, within dtpAat 5297.655 kb on + strand, within dtpAat 5297.855 kb on - strandat 5297.981 kb on - strandat 5298.005 kb on - strandat 5298.036 kb on + strandat 5298.371 kb on - strand, within OKFHMN_27520at 5298.736 kb on - strand, within nthat 5298.871 kb on - strand, within nth

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,296,424 - +0.5
5,296,619 - dtpA OKFHMN_27515 0.13 +1.0
5,296,760 - dtpA OKFHMN_27515 0.22 -0.1
5,296,890 - dtpA OKFHMN_27515 0.31 +0.3
5,297,150 + dtpA OKFHMN_27515 0.48 +0.9
5,297,504 - dtpA OKFHMN_27515 0.72 +1.4
5,297,511 - dtpA OKFHMN_27515 0.72 +1.5
5,297,579 - dtpA OKFHMN_27515 0.77 +1.5
5,297,652 - dtpA OKFHMN_27515 0.82 +0.6
5,297,652 - dtpA OKFHMN_27515 0.82 +2.2
5,297,655 + dtpA OKFHMN_27515 0.82 +0.8
5,297,855 - +0.2
5,297,981 - -0.1
5,298,005 - -0.4
5,298,036 + +0.2
5,298,371 - OKFHMN_27520 0.82 -0.2
5,298,736 - nth OKFHMN_27525 0.32 -0.6
5,298,871 - nth OKFHMN_27525 0.53 +0.3

Or see this region's nucleotide sequence