Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27225

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiM and ydiL are separated by 99 nucleotidesydiL and ydiK are separated by 428 nucleotidesydiK and ydiJ are separated by 388 nucleotides OKFHMN_27210: ydiM - Inner membrane transport protein YdiM, at 5,238,423 to 5,239,637 ydiM OKFHMN_27215: ydiL - Uncharacterized protein YdiL, at 5,239,737 to 5,240,093 ydiL OKFHMN_27225: ydiK - AI-2E family transporter YdiK, at 5,240,522 to 5,241,634 ydiK OKFHMN_27230: ydiJ - Uncharacterized protein YdiJ, at 5,242,023 to 5,245,079 ydiJ Position (kb) 5240 5241 5242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5239.645 kb on - strandat 5239.884 kb on - strand, within ydiLat 5240.099 kb on - strandat 5240.122 kb on - strandat 5240.138 kb on + strandat 5240.419 kb on + strandat 5240.439 kb on + strandat 5240.827 kb on - strand, within ydiKat 5240.837 kb on - strand, within ydiKat 5240.963 kb on + strand, within ydiKat 5240.967 kb on - strand, within ydiKat 5241.146 kb on - strand, within ydiKat 5241.185 kb on - strand, within ydiKat 5241.199 kb on + strand, within ydiKat 5241.202 kb on - strand, within ydiKat 5241.296 kb on - strand, within ydiKat 5241.343 kb on + strand, within ydiKat 5241.703 kb on - strandat 5241.703 kb on - strandat 5241.834 kb on + strandat 5241.835 kb on - strandat 5241.931 kb on + strandat 5241.992 kb on - strandat 5242.019 kb on + strandat 5242.020 kb on - strandat 5242.020 kb on - strandat 5242.161 kb on - strandat 5242.422 kb on + strand, within ydiJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,239,645 - -0.5
5,239,884 - ydiL OKFHMN_27215 0.41 -0.1
5,240,099 - -0.9
5,240,122 - +0.8
5,240,138 + +1.0
5,240,419 + +0.0
5,240,439 + -1.8
5,240,827 - ydiK OKFHMN_27225 0.27 +1.3
5,240,837 - ydiK OKFHMN_27225 0.28 +0.4
5,240,963 + ydiK OKFHMN_27225 0.40 +0.4
5,240,967 - ydiK OKFHMN_27225 0.40 +0.6
5,241,146 - ydiK OKFHMN_27225 0.56 -0.3
5,241,185 - ydiK OKFHMN_27225 0.60 +3.1
5,241,199 + ydiK OKFHMN_27225 0.61 +0.1
5,241,202 - ydiK OKFHMN_27225 0.61 +0.8
5,241,296 - ydiK OKFHMN_27225 0.70 -0.9
5,241,343 + ydiK OKFHMN_27225 0.74 +0.1
5,241,703 - +0.5
5,241,703 - +0.3
5,241,834 + -0.3
5,241,835 - -1.2
5,241,931 + -2.8
5,241,992 - -2.9
5,242,019 + -3.8
5,242,020 - +2.8
5,242,020 - -2.3
5,242,161 - -0.5
5,242,422 + ydiJ OKFHMN_27230 0.13 +2.0

Or see this region's nucleotide sequence