Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26975

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchbC and chbA are separated by 50 nucleotideschbA and chbR are separated by 10 nucleotideschbR and celF are separated by 105 nucleotides OKFHMN_26965: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 5,189,694 to 5,191,052 chbC OKFHMN_26970: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 5,191,103 to 5,191,453 chbA OKFHMN_26975: chbR - transcriptional regulator ChbR, at 5,191,464 to 5,192,303 chbR OKFHMN_26980: celF - 6-phospho-beta-glucosidase, at 5,192,409 to 5,193,761 celF Position (kb) 5191 5192 5193Strain fitness (log2 ratio) -2 -1 0 1at 5190.522 kb on + strand, within chbCat 5190.648 kb on - strand, within chbCat 5190.822 kb on + strand, within chbCat 5190.822 kb on + strand, within chbCat 5190.833 kb on + strand, within chbCat 5191.174 kb on + strand, within chbAat 5191.209 kb on - strand, within chbAat 5192.043 kb on - strand, within chbRat 5192.925 kb on - strand, within celF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,190,522 + chbC OKFHMN_26965 0.61 -0.9
5,190,648 - chbC OKFHMN_26965 0.70 -2.1
5,190,822 + chbC OKFHMN_26965 0.83 +0.7
5,190,822 + chbC OKFHMN_26965 0.83 +0.3
5,190,833 + chbC OKFHMN_26965 0.84 +0.2
5,191,174 + chbA OKFHMN_26970 0.20 -0.2
5,191,209 - chbA OKFHMN_26970 0.30 +0.9
5,192,043 - chbR OKFHMN_26975 0.69 -0.3
5,192,925 - celF OKFHMN_26980 0.38 +0.1

Or see this region's nucleotide sequence