Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26460

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyebS and msrC are separated by 75 nucleotidesmsrC and proQ are separated by 96 nucleotidesproQ and prc are separated by 19 nucleotides OKFHMN_26450: yebS - membrane integrity lipid transport subunit YebS, at 5,091,048 to 5,092,331 yebS OKFHMN_26455: msrC - L-methionine (R)-S-oxide reductase, at 5,092,407 to 5,092,958 msrC OKFHMN_26460: proQ - RNA chaperone ProQ, at 5,093,055 to 5,093,753 proQ OKFHMN_26465: prc - carboxy terminal-processing peptidase, at 5,093,773 to 5,095,821 prc Position (kb) 5093 5094Strain fitness (log2 ratio) -3 -2 -1 0 1at 5092.061 kb on + strand, within yebSat 5092.062 kb on - strand, within yebSat 5092.217 kb on + strandat 5092.249 kb on + strandat 5092.291 kb on - strandat 5092.323 kb on - strandat 5092.346 kb on - strandat 5092.362 kb on - strandat 5092.489 kb on + strand, within msrCat 5092.564 kb on + strand, within msrCat 5092.566 kb on + strand, within msrCat 5092.566 kb on + strand, within msrCat 5092.566 kb on + strand, within msrCat 5092.567 kb on - strand, within msrCat 5092.585 kb on + strand, within msrCat 5092.619 kb on + strand, within msrCat 5092.619 kb on + strand, within msrCat 5092.814 kb on + strand, within msrCat 5092.972 kb on + strandat 5093.040 kb on + strandat 5093.069 kb on + strandat 5093.069 kb on + strandat 5093.078 kb on + strandat 5093.078 kb on + strandat 5093.092 kb on + strandat 5093.092 kb on + strandat 5093.224 kb on + strand, within proQat 5093.341 kb on + strand, within proQat 5094.208 kb on + strand, within prcat 5094.208 kb on + strand, within prcat 5094.210 kb on + strand, within prcat 5094.210 kb on + strand, within prcat 5094.211 kb on - strand, within prcat 5094.211 kb on - strand, within prcat 5094.355 kb on + strand, within prcat 5094.544 kb on + strand, within prc

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,092,061 + yebS OKFHMN_26450 0.79 -0.1
5,092,062 - yebS OKFHMN_26450 0.79 -0.0
5,092,217 + -1.1
5,092,249 + +0.0
5,092,291 - -0.3
5,092,323 - -1.0
5,092,346 - -0.9
5,092,362 - -0.0
5,092,489 + msrC OKFHMN_26455 0.15 -0.5
5,092,564 + msrC OKFHMN_26455 0.28 -0.2
5,092,566 + msrC OKFHMN_26455 0.29 -0.1
5,092,566 + msrC OKFHMN_26455 0.29 -2.6
5,092,566 + msrC OKFHMN_26455 0.29 +0.5
5,092,567 - msrC OKFHMN_26455 0.29 -0.2
5,092,585 + msrC OKFHMN_26455 0.32 +0.8
5,092,619 + msrC OKFHMN_26455 0.38 -0.1
5,092,619 + msrC OKFHMN_26455 0.38 -0.7
5,092,814 + msrC OKFHMN_26455 0.74 +0.0
5,092,972 + +0.3
5,093,040 + -0.4
5,093,069 + -1.1
5,093,069 + -2.7
5,093,078 + -1.5
5,093,078 + -3.2
5,093,092 + -0.9
5,093,092 + -0.7
5,093,224 + proQ OKFHMN_26460 0.24 -2.2
5,093,341 + proQ OKFHMN_26460 0.41 -1.3
5,094,208 + prc OKFHMN_26465 0.21 -2.2
5,094,208 + prc OKFHMN_26465 0.21 -0.3
5,094,210 + prc OKFHMN_26465 0.21 -0.7
5,094,210 + prc OKFHMN_26465 0.21 -1.5
5,094,211 - prc OKFHMN_26465 0.21 -0.9
5,094,211 - prc OKFHMN_26465 0.21 -1.2
5,094,355 + prc OKFHMN_26465 0.28 -0.3
5,094,544 + prc OKFHMN_26465 0.38 -0.3

Or see this region's nucleotide sequence