Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebS and msrC are separated by 75 nucleotides msrC and proQ are separated by 96 nucleotides proQ and prc are separated by 19 nucleotides
OKFHMN_26450: yebS - membrane integrity lipid transport subunit YebS, at 5,091,048 to 5,092,331
yebS
OKFHMN_26455: msrC - L-methionine (R)-S-oxide reductase, at 5,092,407 to 5,092,958
msrC
OKFHMN_26460: proQ - RNA chaperone ProQ, at 5,093,055 to 5,093,753
proQ
OKFHMN_26465: prc - carboxy terminal-processing peptidase, at 5,093,773 to 5,095,821
prc
Position (kb)
5093
5094 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5092.061 kb on + strand, within yebS at 5092.062 kb on - strand, within yebS at 5092.217 kb on + strand at 5092.249 kb on + strand at 5092.291 kb on - strand at 5092.323 kb on - strand at 5092.346 kb on - strand at 5092.362 kb on - strand at 5092.489 kb on + strand, within msrC at 5092.564 kb on + strand, within msrC at 5092.566 kb on + strand, within msrC at 5092.566 kb on + strand, within msrC at 5092.566 kb on + strand, within msrC at 5092.567 kb on - strand, within msrC at 5092.585 kb on + strand, within msrC at 5092.619 kb on + strand, within msrC at 5092.619 kb on + strand, within msrC at 5092.814 kb on + strand, within msrC at 5092.972 kb on + strand at 5093.040 kb on + strand at 5093.069 kb on + strand at 5093.069 kb on + strand at 5093.078 kb on + strand at 5093.078 kb on + strand at 5093.092 kb on + strand at 5093.092 kb on + strand at 5093.224 kb on + strand, within proQ at 5093.341 kb on + strand, within proQ at 5094.208 kb on + strand, within prc at 5094.208 kb on + strand, within prc at 5094.210 kb on + strand, within prc at 5094.210 kb on + strand, within prc at 5094.211 kb on - strand, within prc at 5094.211 kb on - strand, within prc at 5094.355 kb on + strand, within prc at 5094.544 kb on + strand, within prc
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 5,092,061 + yebS OKFHMN_26450 0.79 -0.1 5,092,062 - yebS OKFHMN_26450 0.79 -0.0 5,092,217 + -1.1 5,092,249 + +0.0 5,092,291 - -0.3 5,092,323 - -1.0 5,092,346 - -0.9 5,092,362 - -0.0 5,092,489 + msrC OKFHMN_26455 0.15 -0.5 5,092,564 + msrC OKFHMN_26455 0.28 -0.2 5,092,566 + msrC OKFHMN_26455 0.29 -0.1 5,092,566 + msrC OKFHMN_26455 0.29 -2.6 5,092,566 + msrC OKFHMN_26455 0.29 +0.5 5,092,567 - msrC OKFHMN_26455 0.29 -0.2 5,092,585 + msrC OKFHMN_26455 0.32 +0.8 5,092,619 + msrC OKFHMN_26455 0.38 -0.1 5,092,619 + msrC OKFHMN_26455 0.38 -0.7 5,092,814 + msrC OKFHMN_26455 0.74 +0.0 5,092,972 + +0.3 5,093,040 + -0.4 5,093,069 + -1.1 5,093,069 + -2.7 5,093,078 + -1.5 5,093,078 + -3.2 5,093,092 + -0.9 5,093,092 + -0.7 5,093,224 + proQ OKFHMN_26460 0.24 -2.2 5,093,341 + proQ OKFHMN_26460 0.41 -1.3 5,094,208 + prc OKFHMN_26465 0.21 -2.2 5,094,208 + prc OKFHMN_26465 0.21 -0.3 5,094,210 + prc OKFHMN_26465 0.21 -0.7 5,094,210 + prc OKFHMN_26465 0.21 -1.5 5,094,211 - prc OKFHMN_26465 0.21 -0.9 5,094,211 - prc OKFHMN_26465 0.21 -1.2 5,094,355 + prc OKFHMN_26465 0.28 -0.3 5,094,544 + prc OKFHMN_26465 0.38 -0.3
Or see this region's nucleotide sequence