Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedI and yodC are separated by 78 nucleotides yodC and yedQ are separated by 170 nucleotides yedQ and yedP overlap by 4 nucleotides
OKFHMN_25615: yedI - Inner membrane protein YedI, at 4,957,217 to 4,958,134
yedI
OKFHMN_25620: yodC - Uncharacterized protein YodC, at 4,958,213 to 4,958,395
yodC
OKFHMN_25625: yedQ - cellulose biosynthesis regulator YedQ, at 4,958,566 to 4,960,260
yedQ
OKFHMN_25630: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 4,960,257 to 4,961,072
yedP
Position (kb) 4958
4959
4960
4961 Strain fitness (log2 ratio) -2
-1
0
1 at 4957.674 kb on + strand, within yedI at 4957.969 kb on + strand, within yedI at 4958.148 kb on + strand at 4958.148 kb on + strand at 4958.309 kb on + strand, within yodC at 4958.472 kb on + strand at 4958.473 kb on - strand at 4958.486 kb on + strand at 4958.527 kb on - strand at 4958.539 kb on + strand at 4958.637 kb on + strand at 4958.737 kb on - strand, within yedQ at 4958.784 kb on + strand, within yedQ at 4959.091 kb on + strand, within yedQ at 4959.092 kb on - strand, within yedQ at 4959.163 kb on + strand, within yedQ at 4959.169 kb on + strand, within yedQ at 4959.170 kb on - strand, within yedQ at 4959.304 kb on - strand, within yedQ at 4959.307 kb on - strand, within yedQ at 4959.352 kb on - strand, within yedQ at 4959.352 kb on - strand, within yedQ at 4959.418 kb on - strand, within yedQ at 4959.547 kb on + strand, within yedQ at 4959.605 kb on + strand, within yedQ at 4959.727 kb on + strand, within yedQ at 4959.728 kb on - strand, within yedQ at 4959.782 kb on + strand, within yedQ at 4959.784 kb on + strand, within yedQ at 4960.062 kb on + strand, within yedQ at 4960.144 kb on - strand at 4960.372 kb on - strand, within yedP at 4960.557 kb on - strand, within yedP at 4961.003 kb on - strand at 4961.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,957,674 + yedI OKFHMN_25615 0.50 +0.1 4,957,969 + yedI OKFHMN_25615 0.82 -0.5 4,958,148 + +0.3 4,958,148 + +0.6 4,958,309 + yodC OKFHMN_25620 0.52 -1.9 4,958,472 + +1.5 4,958,473 - +0.2 4,958,486 + -0.4 4,958,527 - -1.1 4,958,539 + +1.1 4,958,637 + -0.7 4,958,737 - yedQ OKFHMN_25625 0.10 +0.0 4,958,784 + yedQ OKFHMN_25625 0.13 -0.9 4,959,091 + yedQ OKFHMN_25625 0.31 -0.9 4,959,092 - yedQ OKFHMN_25625 0.31 +0.3 4,959,163 + yedQ OKFHMN_25625 0.35 -2.0 4,959,169 + yedQ OKFHMN_25625 0.36 -1.8 4,959,170 - yedQ OKFHMN_25625 0.36 +0.3 4,959,304 - yedQ OKFHMN_25625 0.44 +0.3 4,959,307 - yedQ OKFHMN_25625 0.44 -0.1 4,959,352 - yedQ OKFHMN_25625 0.46 +0.0 4,959,352 - yedQ OKFHMN_25625 0.46 +1.0 4,959,418 - yedQ OKFHMN_25625 0.50 -0.3 4,959,547 + yedQ OKFHMN_25625 0.58 -1.5 4,959,605 + yedQ OKFHMN_25625 0.61 -0.4 4,959,727 + yedQ OKFHMN_25625 0.68 +0.7 4,959,728 - yedQ OKFHMN_25625 0.69 -0.3 4,959,782 + yedQ OKFHMN_25625 0.72 +0.4 4,959,784 + yedQ OKFHMN_25625 0.72 +0.8 4,960,062 + yedQ OKFHMN_25625 0.88 +0.6 4,960,144 - +1.1 4,960,372 - yedP OKFHMN_25630 0.14 -0.6 4,960,557 - yedP OKFHMN_25630 0.37 +0.8 4,961,003 - -0.7 4,961,007 - +0.2
Or see this region's nucleotide sequence