Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25545

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyodB and zinT are separated by 342 nucleotideszinT and msrQ are separated by 235 nucleotidesmsrQ and msrP are separated by 0 nucleotides OKFHMN_25540: yodB - Cytochrome b561-like protein, at 4,943,693 to 4,944,223 yodB OKFHMN_25545: zinT - metal-binding protein ZinT, at 4,944,566 to 4,945,237 zinT OKFHMN_25550: msrQ - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 4,945,473 to 4,946,108 msrQ OKFHMN_25555: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,946,109 to 4,947,113 msrP Position (kb) 4944 4945 4946Strain fitness (log2 ratio) -2 -1 0 1at 4943.729 kb on - strandat 4943.950 kb on - strand, within yodBat 4944.112 kb on + strand, within yodBat 4944.113 kb on - strand, within yodBat 4944.283 kb on + strandat 4944.284 kb on - strandat 4944.349 kb on - strandat 4944.457 kb on - strandat 4945.388 kb on + strandat 4945.477 kb on - strandat 4945.477 kb on - strandat 4945.574 kb on - strand, within msrQat 4946.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,943,729 - +0.1
4,943,950 - yodB OKFHMN_25540 0.48 +0.4
4,944,112 + yodB OKFHMN_25540 0.79 -0.3
4,944,113 - yodB OKFHMN_25540 0.79 -0.8
4,944,283 + -0.7
4,944,284 - +0.4
4,944,349 - -0.0
4,944,457 - -2.1
4,945,388 + -0.3
4,945,477 - -0.5
4,945,477 - -0.7
4,945,574 - msrQ OKFHMN_25550 0.16 -2.6
4,946,171 + +1.0

Or see this region's nucleotide sequence