Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_24400 and galF are separated by 242 nucleotides galF and wcaA are separated by 318 nucleotides
OKFHMN_24400: OKFHMN_24400 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 4,766,070 to 4,767,065
_24400
OKFHMN_24405: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 4,767,308 to 4,768,201
galF
OKFHMN_24410: wcaA - glycosyl transferase, at 4,768,520 to 4,769,302
wcaA
Position (kb)
4767
4768
4769 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 4766.310 kb on + strand, within OKFHMN_24400 at 4766.310 kb on + strand, within OKFHMN_24400 at 4766.511 kb on - strand, within OKFHMN_24400 at 4766.536 kb on + strand, within OKFHMN_24400 at 4766.540 kb on + strand, within OKFHMN_24400 at 4766.559 kb on - strand, within OKFHMN_24400 at 4766.591 kb on + strand, within OKFHMN_24400 at 4766.591 kb on + strand, within OKFHMN_24400 at 4766.591 kb on + strand, within OKFHMN_24400 at 4766.645 kb on + strand, within OKFHMN_24400 at 4766.651 kb on + strand, within OKFHMN_24400 at 4766.664 kb on + strand, within OKFHMN_24400 at 4766.664 kb on + strand, within OKFHMN_24400 at 4766.664 kb on + strand, within OKFHMN_24400 at 4766.687 kb on + strand, within OKFHMN_24400 at 4766.813 kb on + strand, within OKFHMN_24400 at 4766.813 kb on + strand, within OKFHMN_24400 at 4766.813 kb on + strand, within OKFHMN_24400 at 4767.046 kb on + strand at 4767.063 kb on + strand at 4767.141 kb on - strand at 4767.187 kb on + strand at 4767.225 kb on + strand at 4767.237 kb on + strand at 4767.237 kb on + strand at 4767.239 kb on + strand at 4767.328 kb on + strand at 4767.355 kb on + strand at 4767.355 kb on + strand at 4767.573 kb on + strand, within galF at 4767.580 kb on + strand, within galF at 4767.580 kb on + strand, within galF at 4767.950 kb on + strand, within galF at 4768.012 kb on + strand, within galF at 4768.112 kb on + strand at 4768.141 kb on - strand at 4768.307 kb on + strand at 4768.336 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,766,310 + OKFHMN_24400 0.24 +0.9 4,766,310 + OKFHMN_24400 0.24 +0.8 4,766,511 - OKFHMN_24400 0.44 +0.6 4,766,536 + OKFHMN_24400 0.47 +0.8 4,766,540 + OKFHMN_24400 0.47 +0.8 4,766,559 - OKFHMN_24400 0.49 +0.5 4,766,591 + OKFHMN_24400 0.52 +0.9 4,766,591 + OKFHMN_24400 0.52 +0.2 4,766,591 + OKFHMN_24400 0.52 +0.8 4,766,645 + OKFHMN_24400 0.58 +0.2 4,766,651 + OKFHMN_24400 0.58 +0.7 4,766,664 + OKFHMN_24400 0.60 +0.2 4,766,664 + OKFHMN_24400 0.60 +0.4 4,766,664 + OKFHMN_24400 0.60 +0.0 4,766,687 + OKFHMN_24400 0.62 +1.2 4,766,813 + OKFHMN_24400 0.75 +0.3 4,766,813 + OKFHMN_24400 0.75 +0.6 4,766,813 + OKFHMN_24400 0.75 +0.1 4,767,046 + -0.1 4,767,063 + -0.1 4,767,141 - -6.7 4,767,187 + +0.4 4,767,225 + +1.0 4,767,237 + -0.5 4,767,237 + -0.9 4,767,239 + +0.5 4,767,328 + +0.1 4,767,355 + -1.2 4,767,355 + +0.0 4,767,573 + galF OKFHMN_24405 0.30 +0.4 4,767,580 + galF OKFHMN_24405 0.30 +0.5 4,767,580 + galF OKFHMN_24405 0.30 -0.6 4,767,950 + galF OKFHMN_24405 0.72 +0.2 4,768,012 + galF OKFHMN_24405 0.79 +1.4 4,768,112 + -0.7 4,768,141 - +0.3 4,768,307 + +0.2 4,768,336 + -0.6
Or see this region's nucleotide sequence