Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24390

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwcaK and wcaL overlap by 4 nucleotideswcaL and wcaM are separated by 10 nucleotides OKFHMN_24385: wcaK - colanic acid biosynthesis pyruvyl transferase WcaK, at 4,762,010 to 4,763,290 wcaK OKFHMN_24390: wcaL - colanic acid biosynthesis glycosyltransferase WcaL, at 4,763,287 to 4,764,507 wcaL OKFHMN_24395: wcaM - colanic acid biosynthesis protein WcaM, at 4,764,518 to 4,765,912 wcaM Position (kb) 4763 4764 4765Strain fitness (log2 ratio) -3 -2 -1 0 1at 4762.372 kb on + strand, within wcaKat 4762.466 kb on - strand, within wcaKat 4762.673 kb on + strand, within wcaKat 4762.673 kb on + strand, within wcaKat 4762.674 kb on - strand, within wcaKat 4762.856 kb on - strand, within wcaKat 4762.872 kb on - strand, within wcaKat 4762.874 kb on - strand, within wcaKat 4762.941 kb on + strand, within wcaKat 4762.941 kb on + strand, within wcaKat 4762.941 kb on + strand, within wcaKat 4762.942 kb on - strand, within wcaKat 4763.069 kb on + strand, within wcaKat 4763.139 kb on + strand, within wcaKat 4763.368 kb on - strandat 4763.440 kb on + strand, within wcaLat 4763.777 kb on - strand, within wcaLat 4763.962 kb on - strand, within wcaLat 4763.962 kb on - strand, within wcaLat 4764.109 kb on + strand, within wcaLat 4764.286 kb on - strand, within wcaLat 4764.504 kb on - strandat 4764.517 kb on + strandat 4764.939 kb on - strand, within wcaMat 4765.084 kb on - strand, within wcaMat 4765.168 kb on + strand, within wcaMat 4765.169 kb on - strand, within wcaMat 4765.229 kb on - strand, within wcaMat 4765.409 kb on + strand, within wcaM

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,762,372 + wcaK OKFHMN_24385 0.28 -0.4
4,762,466 - wcaK OKFHMN_24385 0.36 +1.1
4,762,673 + wcaK OKFHMN_24385 0.52 +0.1
4,762,673 + wcaK OKFHMN_24385 0.52 +0.9
4,762,674 - wcaK OKFHMN_24385 0.52 +1.4
4,762,856 - wcaK OKFHMN_24385 0.66 -2.5
4,762,872 - wcaK OKFHMN_24385 0.67 +0.4
4,762,874 - wcaK OKFHMN_24385 0.67 -3.3
4,762,941 + wcaK OKFHMN_24385 0.73 -2.0
4,762,941 + wcaK OKFHMN_24385 0.73 +0.3
4,762,941 + wcaK OKFHMN_24385 0.73 -1.6
4,762,942 - wcaK OKFHMN_24385 0.73 +0.6
4,763,069 + wcaK OKFHMN_24385 0.83 -0.4
4,763,139 + wcaK OKFHMN_24385 0.88 -1.2
4,763,368 - -0.2
4,763,440 + wcaL OKFHMN_24390 0.13 -1.1
4,763,777 - wcaL OKFHMN_24390 0.40 +0.5
4,763,962 - wcaL OKFHMN_24390 0.55 -0.5
4,763,962 - wcaL OKFHMN_24390 0.55 +0.1
4,764,109 + wcaL OKFHMN_24390 0.67 -0.9
4,764,286 - wcaL OKFHMN_24390 0.82 -1.3
4,764,504 - -1.3
4,764,517 + -2.7
4,764,939 - wcaM OKFHMN_24395 0.30 +0.5
4,765,084 - wcaM OKFHMN_24395 0.41 -0.5
4,765,168 + wcaM OKFHMN_24395 0.47 +0.2
4,765,169 - wcaM OKFHMN_24395 0.47 -2.7
4,765,229 - wcaM OKFHMN_24395 0.51 -0.4
4,765,409 + wcaM OKFHMN_24395 0.64 -0.5

Or see this region's nucleotide sequence