Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wzc and wcaA are separated by 92 nucleotides wcaA and wcaB are separated by 2 nucleotides wcaB and wcaC overlap by 4 nucleotides
OKFHMN_24310: wzc - tyrosine-protein kinase Wzc, at 4,744,767 to 4,746,929
wzc
OKFHMN_24315: wcaA - colanic acid biosynthesis glycosyltransferase WcaA, at 4,747,022 to 4,747,861
wcaA
OKFHMN_24320: wcaB - colanic acid biosynthesis acetyltransferase WcaB, at 4,747,864 to 4,748,352
wcaB
OKFHMN_24325: wcaC - colanic acid biosynthesis glycosyltransferase WcaC, at 4,748,349 to 4,749,566
wcaC
Position (kb) 4747
4748
4749 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4746.888 kb on + strand at 4746.897 kb on + strand at 4746.909 kb on + strand at 4747.022 kb on - strand at 4747.211 kb on + strand, within wcaA at 4747.253 kb on - strand, within wcaA at 4747.284 kb on - strand, within wcaA at 4747.391 kb on + strand, within wcaA at 4747.392 kb on - strand, within wcaA at 4747.392 kb on - strand, within wcaA at 4747.392 kb on - strand, within wcaA at 4747.439 kb on + strand, within wcaA at 4747.472 kb on + strand, within wcaA at 4747.473 kb on - strand, within wcaA at 4747.505 kb on - strand, within wcaA at 4747.784 kb on - strand at 4748.073 kb on + strand, within wcaB at 4748.106 kb on + strand, within wcaB at 4748.107 kb on - strand, within wcaB at 4748.230 kb on - strand, within wcaB at 4748.230 kb on - strand, within wcaB at 4748.346 kb on + strand at 4748.522 kb on + strand, within wcaC at 4748.602 kb on + strand, within wcaC at 4748.602 kb on + strand, within wcaC at 4748.615 kb on + strand, within wcaC at 4748.665 kb on - strand, within wcaC at 4748.678 kb on + strand, within wcaC at 4748.678 kb on + strand, within wcaC at 4748.837 kb on + strand, within wcaC at 4748.837 kb on + strand, within wcaC at 4749.183 kb on - strand, within wcaC at 4749.216 kb on - strand, within wcaC at 4749.216 kb on - strand, within wcaC
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,746,888 + +0.8 4,746,897 + +0.1 4,746,909 + +0.2 4,747,022 - -2.9 4,747,211 + wcaA OKFHMN_24315 0.23 +0.1 4,747,253 - wcaA OKFHMN_24315 0.28 +0.3 4,747,284 - wcaA OKFHMN_24315 0.31 +0.3 4,747,391 + wcaA OKFHMN_24315 0.44 -0.1 4,747,392 - wcaA OKFHMN_24315 0.44 +0.7 4,747,392 - wcaA OKFHMN_24315 0.44 -1.6 4,747,392 - wcaA OKFHMN_24315 0.44 +1.0 4,747,439 + wcaA OKFHMN_24315 0.50 -0.5 4,747,472 + wcaA OKFHMN_24315 0.54 +0.9 4,747,473 - wcaA OKFHMN_24315 0.54 +0.3 4,747,505 - wcaA OKFHMN_24315 0.57 -0.3 4,747,784 - +0.4 4,748,073 + wcaB OKFHMN_24320 0.43 -0.5 4,748,106 + wcaB OKFHMN_24320 0.49 -0.4 4,748,107 - wcaB OKFHMN_24320 0.50 -0.8 4,748,230 - wcaB OKFHMN_24320 0.75 -1.9 4,748,230 - wcaB OKFHMN_24320 0.75 -2.1 4,748,346 + -0.9 4,748,522 + wcaC OKFHMN_24325 0.14 -0.7 4,748,602 + wcaC OKFHMN_24325 0.21 +0.1 4,748,602 + wcaC OKFHMN_24325 0.21 +0.3 4,748,615 + wcaC OKFHMN_24325 0.22 -0.0 4,748,665 - wcaC OKFHMN_24325 0.26 +0.6 4,748,678 + wcaC OKFHMN_24325 0.27 -0.7 4,748,678 + wcaC OKFHMN_24325 0.27 -0.5 4,748,837 + wcaC OKFHMN_24325 0.40 -0.2 4,748,837 + wcaC OKFHMN_24325 0.40 +0.7 4,749,183 - wcaC OKFHMN_24325 0.68 +0.7 4,749,216 - wcaC OKFHMN_24325 0.71 -0.3 4,749,216 - wcaC OKFHMN_24325 0.71 +0.6
Or see this region's nucleotide sequence