Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24065

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_24065 and thiM are separated by 333 nucleotides OKFHMN_24065: OKFHMN_24065 - transcription factor, at 4,696,388 to 4,696,627 _24065 OKFHMN_24070: thiM - hydroxyethylthiazole kinase, at 4,696,961 to 4,697,749 thiM Position (kb) 4696 4697Strain fitness (log2 ratio) -1 0 1at 4695.555 kb on - strandat 4696.338 kb on + strandat 4696.370 kb on + strandat 4696.531 kb on - strand, within OKFHMN_24065at 4696.609 kb on - strandat 4696.680 kb on + strandat 4696.762 kb on - strandat 4696.877 kb on + strandat 4696.877 kb on + strandat 4697.005 kb on - strandat 4697.077 kb on + strand, within thiMat 4697.362 kb on - strand, within thiMat 4697.486 kb on + strand, within thiMat 4697.487 kb on - strand, within thiMat 4697.492 kb on - strand, within thiMat 4697.550 kb on + strand, within thiM

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,695,555 - -0.1
4,696,338 + +0.7
4,696,370 + -0.4
4,696,531 - OKFHMN_24065 0.60 -0.1
4,696,609 - -0.7
4,696,680 + -0.3
4,696,762 - -1.6
4,696,877 + +0.5
4,696,877 + +0.2
4,697,005 - +0.7
4,697,077 + thiM OKFHMN_24070 0.15 -0.5
4,697,362 - thiM OKFHMN_24070 0.51 -0.0
4,697,486 + thiM OKFHMN_24070 0.67 +0.2
4,697,487 - thiM OKFHMN_24070 0.67 -0.7
4,697,492 - thiM OKFHMN_24070 0.67 +0.4
4,697,550 + thiM OKFHMN_24070 0.75 +0.4

Or see this region's nucleotide sequence