Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23960

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyehL and zorP are separated by 432 nucleotideszorP and zorO are separated by 519 nucleotideszorO and OKFHMN_23975 are separated by 109 nucleotides OKFHMN_23950: yehL - Uncharacterized protein YehL, at 4,670,425 to 4,671,513 yehL OKFHMN_23960: zorP - Small toxic protein ZorP, at 4,671,946 to 4,672,035 zorP OKFHMN_23970: zorO - Small toxic protein ZorO, at 4,672,555 to 4,672,644 zorO OKFHMN_23975: OKFHMN_23975 - Protein, at 4,672,754 to 4,673,071 _23975 Position (kb) 4671 4672 4673Strain fitness (log2 ratio) -2 -1 0 1at 4671.004 kb on + strand, within yehLat 4671.005 kb on - strand, within yehLat 4671.005 kb on - strand, within yehLat 4671.034 kb on - strand, within yehLat 4671.174 kb on + strand, within yehLat 4671.309 kb on + strand, within yehLat 4671.309 kb on + strand, within yehLat 4671.310 kb on - strand, within yehLat 4671.331 kb on - strand, within yehLat 4671.352 kb on - strand, within yehLat 4671.375 kb on + strand, within yehLat 4671.442 kb on + strandat 4671.467 kb on - strandat 4671.580 kb on + strandat 4671.662 kb on + strandat 4671.745 kb on - strandat 4671.749 kb on + strandat 4671.760 kb on - strandat 4671.876 kb on - strandat 4671.903 kb on - strandat 4672.488 kb on + strandat 4672.543 kb on + strandat 4672.700 kb on - strandat 4672.702 kb on - strandat 4672.750 kb on + strandat 4672.863 kb on - strand, within OKFHMN_23975at 4673.034 kb on + strand, within OKFHMN_23975

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,671,004 + yehL OKFHMN_23950 0.53 -0.8
4,671,005 - yehL OKFHMN_23950 0.53 -1.5
4,671,005 - yehL OKFHMN_23950 0.53 +0.7
4,671,034 - yehL OKFHMN_23950 0.56 +0.7
4,671,174 + yehL OKFHMN_23950 0.69 +1.2
4,671,309 + yehL OKFHMN_23950 0.81 -1.5
4,671,309 + yehL OKFHMN_23950 0.81 -1.3
4,671,310 - yehL OKFHMN_23950 0.81 +0.7
4,671,331 - yehL OKFHMN_23950 0.83 -0.1
4,671,352 - yehL OKFHMN_23950 0.85 +0.9
4,671,375 + yehL OKFHMN_23950 0.87 +0.1
4,671,442 + -0.8
4,671,467 - -0.2
4,671,580 + +0.4
4,671,662 + -0.9
4,671,745 - +0.9
4,671,749 + -0.3
4,671,760 - +1.1
4,671,876 - +0.6
4,671,903 - -0.0
4,672,488 + -1.1
4,672,543 + -0.6
4,672,700 - -0.3
4,672,702 - -2.4
4,672,750 + +0.1
4,672,863 - OKFHMN_23975 0.34 +0.7
4,673,034 + OKFHMN_23975 0.88 -0.2

Or see this region's nucleotide sequence