Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gtdA and ycgM are separated by 14 nucleotides ycgM and maiA are separated by 8 nucleotides maiA and ubiH are separated by 14 nucleotides
OKFHMN_23595: gtdA - gentisate 1,2-dioxygenase, at 4,610,275 to 4,611,303
gtdA
OKFHMN_23600: ycgM - 5-carboxymethyl-2-hydroxymuconate isomerase, at 4,611,318 to 4,612,019
ycgM
OKFHMN_23605: maiA - maleylacetoacetate isomerase, at 4,612,028 to 4,612,672
maiA
OKFHMN_23610: ubiH - 3-hydroxybenzoate 6-monooxygenase, at 4,612,687 to 4,613,880
ubiH
Position (kb) 4611
4612
4613 Strain fitness (log2 ratio) -1
0
1
2 at 4610.320 kb on - strand at 4610.388 kb on + strand, within gtdA at 4610.537 kb on + strand, within gtdA at 4610.614 kb on - strand, within gtdA at 4610.638 kb on - strand, within gtdA at 4610.845 kb on + strand, within gtdA at 4610.845 kb on + strand, within gtdA at 4610.845 kb on + strand, within gtdA at 4610.868 kb on + strand, within gtdA at 4610.913 kb on + strand, within gtdA at 4610.918 kb on - strand, within gtdA at 4610.918 kb on - strand, within gtdA at 4611.112 kb on + strand, within gtdA at 4611.112 kb on + strand, within gtdA at 4611.112 kb on + strand, within gtdA at 4611.112 kb on + strand, within gtdA at 4611.112 kb on + strand, within gtdA at 4611.112 kb on + strand, within gtdA at 4611.113 kb on - strand, within gtdA at 4611.113 kb on - strand, within gtdA at 4611.264 kb on - strand at 4611.331 kb on + strand at 4611.420 kb on + strand, within ycgM at 4611.554 kb on + strand, within ycgM at 4611.558 kb on + strand, within ycgM at 4611.633 kb on + strand, within ycgM at 4611.633 kb on + strand, within ycgM at 4611.634 kb on - strand, within ycgM at 4611.805 kb on + strand, within ycgM at 4611.805 kb on + strand, within ycgM at 4611.879 kb on + strand, within ycgM at 4612.052 kb on - strand at 4612.103 kb on + strand, within maiA at 4612.123 kb on + strand, within maiA at 4612.124 kb on - strand, within maiA at 4612.257 kb on - strand, within maiA at 4612.658 kb on - strand at 4612.683 kb on + strand at 4612.683 kb on + strand at 4612.683 kb on + strand at 4612.684 kb on - strand at 4612.684 kb on - strand at 4612.686 kb on - strand at 4612.709 kb on + strand at 4612.912 kb on - strand, within ubiH at 4612.912 kb on - strand, within ubiH at 4612.994 kb on - strand, within ubiH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,610,320 - +0.1 4,610,388 + gtdA OKFHMN_23595 0.11 -0.2 4,610,537 + gtdA OKFHMN_23595 0.25 -0.7 4,610,614 - gtdA OKFHMN_23595 0.33 +0.4 4,610,638 - gtdA OKFHMN_23595 0.35 +1.4 4,610,845 + gtdA OKFHMN_23595 0.55 +1.1 4,610,845 + gtdA OKFHMN_23595 0.55 +0.3 4,610,845 + gtdA OKFHMN_23595 0.55 +0.0 4,610,868 + gtdA OKFHMN_23595 0.58 +0.8 4,610,913 + gtdA OKFHMN_23595 0.62 +1.0 4,610,918 - gtdA OKFHMN_23595 0.62 +0.7 4,610,918 - gtdA OKFHMN_23595 0.62 +0.5 4,611,112 + gtdA OKFHMN_23595 0.81 -0.5 4,611,112 + gtdA OKFHMN_23595 0.81 -0.2 4,611,112 + gtdA OKFHMN_23595 0.81 -0.1 4,611,112 + gtdA OKFHMN_23595 0.81 +0.6 4,611,112 + gtdA OKFHMN_23595 0.81 -0.1 4,611,112 + gtdA OKFHMN_23595 0.81 +0.6 4,611,113 - gtdA OKFHMN_23595 0.81 -0.2 4,611,113 - gtdA OKFHMN_23595 0.81 -0.3 4,611,264 - +0.5 4,611,331 + +0.6 4,611,420 + ycgM OKFHMN_23600 0.15 -0.4 4,611,554 + ycgM OKFHMN_23600 0.34 +1.4 4,611,558 + ycgM OKFHMN_23600 0.34 +0.2 4,611,633 + ycgM OKFHMN_23600 0.45 +1.1 4,611,633 + ycgM OKFHMN_23600 0.45 +0.8 4,611,634 - ycgM OKFHMN_23600 0.45 +1.3 4,611,805 + ycgM OKFHMN_23600 0.69 -0.3 4,611,805 + ycgM OKFHMN_23600 0.69 +0.9 4,611,879 + ycgM OKFHMN_23600 0.80 +0.5 4,612,052 - -0.8 4,612,103 + maiA OKFHMN_23605 0.12 -0.8 4,612,123 + maiA OKFHMN_23605 0.15 -0.3 4,612,124 - maiA OKFHMN_23605 0.15 +0.0 4,612,257 - maiA OKFHMN_23605 0.36 -1.4 4,612,658 - +1.1 4,612,683 + -0.4 4,612,683 + -0.4 4,612,683 + +0.1 4,612,684 - +0.2 4,612,684 - +0.9 4,612,686 - -0.6 4,612,709 + +2.3 4,612,912 - ubiH OKFHMN_23610 0.19 -0.9 4,612,912 - ubiH OKFHMN_23610 0.19 -0.3 4,612,994 - ubiH OKFHMN_23610 0.26 +1.6
Or see this region's nucleotide sequence