Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22690

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfolC and dedD overlap by 11 nucleotidesdedD and cvpA are separated by 531 nucleotides OKFHMN_22685: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 4,415,284 to 4,416,552 folC OKFHMN_22690: dedD - cell division protein DedD, at 4,416,542 to 4,417,204 dedD OKFHMN_22710: cvpA - colicin V production protein, at 4,417,736 to 4,418,224 cvpA Position (kb) 4416 4417 4418Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4416.809 kb on - strand, within dedDat 4416.971 kb on + strand, within dedDat 4416.971 kb on + strand, within dedDat 4416.971 kb on + strand, within dedDat 4416.972 kb on - strand, within dedDat 4417.056 kb on - strand, within dedDat 4417.057 kb on + strand, within dedDat 4417.057 kb on + strand, within dedDat 4417.057 kb on + strand, within dedDat 4417.057 kb on + strand, within dedDat 4417.170 kb on + strandat 4417.190 kb on + strandat 4417.265 kb on + strandat 4417.429 kb on + strandat 4417.440 kb on - strandat 4417.448 kb on - strandat 4417.735 kb on + strandat 4417.751 kb on + strandat 4417.865 kb on + strand, within cvpAat 4417.869 kb on - strand, within cvpAat 4417.874 kb on + strand, within cvpAat 4417.874 kb on + strand, within cvpAat 4417.874 kb on + strand, within cvpAat 4417.986 kb on + strand, within cvpAat 4418.080 kb on + strand, within cvpAat 4418.080 kb on + strand, within cvpAat 4418.164 kb on + strand, within cvpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,416,809 - dedD OKFHMN_22690 0.40 +2.2
4,416,971 + dedD OKFHMN_22690 0.65 -0.1
4,416,971 + dedD OKFHMN_22690 0.65 +0.4
4,416,971 + dedD OKFHMN_22690 0.65 +1.1
4,416,972 - dedD OKFHMN_22690 0.65 +1.1
4,417,056 - dedD OKFHMN_22690 0.78 +1.6
4,417,057 + dedD OKFHMN_22690 0.78 +0.5
4,417,057 + dedD OKFHMN_22690 0.78 -1.7
4,417,057 + dedD OKFHMN_22690 0.78 -3.8
4,417,057 + dedD OKFHMN_22690 0.78 -0.1
4,417,170 + +1.3
4,417,190 + +0.5
4,417,265 + +0.3
4,417,429 + -3.1
4,417,440 - -0.6
4,417,448 - +0.5
4,417,735 + -0.8
4,417,751 + -0.2
4,417,865 + cvpA OKFHMN_22710 0.26 -0.9
4,417,869 - cvpA OKFHMN_22710 0.27 -1.7
4,417,874 + cvpA OKFHMN_22710 0.28 +0.6
4,417,874 + cvpA OKFHMN_22710 0.28 -0.0
4,417,874 + cvpA OKFHMN_22710 0.28 -0.4
4,417,986 + cvpA OKFHMN_22710 0.51 -5.2
4,418,080 + cvpA OKFHMN_22710 0.70 -2.8
4,418,080 + cvpA OKFHMN_22710 0.70 +0.2
4,418,164 + cvpA OKFHMN_22710 0.88 -0.9

Or see this region's nucleotide sequence