Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aegA and nudK are separated by 67 nucleotides nudK and ypfG are separated by 125 nucleotides
OKFHMN_21980: aegA - formate-dependent uric acid utilization protein AegA, at 4,272,930 to 4,274,909
aegA
OKFHMN_21985: nudK - GDP-mannose pyrophosphatase NudK, at 4,274,977 to 4,275,552
nudK
OKFHMN_21990: ypfG - Uncharacterized protein YpfG, at 4,275,678 to 4,276,721
ypfG
Position (kb)
4274
4275
4276 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4273.996 kb on - strand, within aegA at 4274.166 kb on + strand, within aegA at 4274.441 kb on + strand, within aegA at 4274.441 kb on + strand, within aegA at 4274.719 kb on + strand at 4274.910 kb on + strand at 4274.911 kb on - strand at 4274.945 kb on + strand at 4274.945 kb on + strand at 4274.947 kb on + strand at 4274.948 kb on - strand at 4274.948 kb on - strand at 4275.025 kb on + strand at 4275.026 kb on - strand at 4275.045 kb on + strand, within nudK at 4275.045 kb on + strand, within nudK at 4275.046 kb on - strand, within nudK at 4275.050 kb on - strand, within nudK at 4275.050 kb on - strand, within nudK at 4275.331 kb on + strand, within nudK at 4275.331 kb on + strand, within nudK at 4275.331 kb on + strand, within nudK at 4275.333 kb on + strand, within nudK at 4275.334 kb on - strand, within nudK at 4275.334 kb on - strand, within nudK at 4275.783 kb on - strand, within ypfG at 4275.813 kb on - strand, within ypfG at 4275.813 kb on - strand, within ypfG at 4275.824 kb on + strand, within ypfG at 4275.881 kb on - strand, within ypfG at 4275.970 kb on + strand, within ypfG at 4276.003 kb on + strand, within ypfG at 4276.006 kb on + strand, within ypfG at 4276.006 kb on + strand, within ypfG at 4276.376 kb on + strand, within ypfG at 4276.395 kb on - strand, within ypfG at 4276.395 kb on - strand, within ypfG at 4276.414 kb on - strand, within ypfG at 4276.415 kb on + strand, within ypfG
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,273,996 - aegA OKFHMN_21980 0.54 +0.5 4,274,166 + aegA OKFHMN_21980 0.62 -1.9 4,274,441 + aegA OKFHMN_21980 0.76 -0.2 4,274,441 + aegA OKFHMN_21980 0.76 -0.3 4,274,719 + -0.1 4,274,910 + -0.8 4,274,911 - +0.6 4,274,945 + +0.6 4,274,945 + +0.8 4,274,947 + +0.9 4,274,948 - +0.2 4,274,948 - +0.5 4,275,025 + +0.7 4,275,026 - -0.8 4,275,045 + nudK OKFHMN_21985 0.12 -0.4 4,275,045 + nudK OKFHMN_21985 0.12 -2.3 4,275,046 - nudK OKFHMN_21985 0.12 -0.3 4,275,050 - nudK OKFHMN_21985 0.13 -0.3 4,275,050 - nudK OKFHMN_21985 0.13 +0.1 4,275,331 + nudK OKFHMN_21985 0.61 -1.8 4,275,331 + nudK OKFHMN_21985 0.61 +0.1 4,275,331 + nudK OKFHMN_21985 0.61 -0.1 4,275,333 + nudK OKFHMN_21985 0.62 +1.7 4,275,334 - nudK OKFHMN_21985 0.62 -0.9 4,275,334 - nudK OKFHMN_21985 0.62 -0.7 4,275,783 - ypfG OKFHMN_21990 0.10 -0.2 4,275,813 - ypfG OKFHMN_21990 0.13 -0.1 4,275,813 - ypfG OKFHMN_21990 0.13 -0.8 4,275,824 + ypfG OKFHMN_21990 0.14 +0.1 4,275,881 - ypfG OKFHMN_21990 0.19 -1.4 4,275,970 + ypfG OKFHMN_21990 0.28 +0.1 4,276,003 + ypfG OKFHMN_21990 0.31 -0.5 4,276,006 + ypfG OKFHMN_21990 0.31 +2.2 4,276,006 + ypfG OKFHMN_21990 0.31 +0.6 4,276,376 + ypfG OKFHMN_21990 0.67 -0.3 4,276,395 - ypfG OKFHMN_21990 0.69 -2.0 4,276,395 - ypfG OKFHMN_21990 0.69 +0.6 4,276,414 - ypfG OKFHMN_21990 0.70 -1.9 4,276,415 + ypfG OKFHMN_21990 0.71 +1.3
Or see this region's nucleotide sequence