Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pat and tapT are separated by 31 nucleotides tapT and trxC are separated by 68 nucleotides trxC and yfiF are separated by 206 nucleotides
OKFHMN_21320: pat - protein lysine acetyltransferase, at 4,131,769 to 4,134,429
pat
OKFHMN_21325: tapT - tRNA-uridine aminocarboxypropyltransferase, at 4,134,461 to 4,135,159
tapT
OKFHMN_21330: trxC - thioredoxin TrxC, at 4,135,228 to 4,135,647
trxC
OKFHMN_21335: yfiF - tRNA/rRNA methyltransferase, at 4,135,854 to 4,136,891
yfiF
Position (kb) 4135
4136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4134.380 kb on - strand at 4134.430 kb on - strand at 4134.587 kb on - strand, within tapT at 4134.587 kb on - strand, within tapT at 4134.591 kb on - strand, within tapT at 4134.616 kb on + strand, within tapT at 4134.617 kb on - strand, within tapT at 4134.621 kb on + strand, within tapT at 4134.621 kb on + strand, within tapT at 4134.715 kb on + strand, within tapT at 4134.716 kb on - strand, within tapT at 4134.819 kb on + strand, within tapT at 4134.919 kb on + strand, within tapT at 4135.040 kb on + strand, within tapT at 4135.041 kb on - strand, within tapT at 4135.041 kb on - strand, within tapT at 4135.121 kb on - strand at 4135.490 kb on - strand, within trxC at 4135.647 kb on + strand at 4135.647 kb on + strand at 4135.648 kb on - strand at 4135.652 kb on - strand at 4135.667 kb on - strand at 4135.667 kb on - strand at 4135.667 kb on - strand at 4135.710 kb on + strand at 4135.710 kb on + strand at 4135.714 kb on + strand at 4135.715 kb on - strand at 4135.758 kb on + strand at 4135.759 kb on - strand at 4135.762 kb on + strand at 4135.762 kb on + strand at 4135.763 kb on - strand at 4135.767 kb on + strand at 4135.874 kb on + strand at 4135.931 kb on + strand at 4136.323 kb on + strand, within yfiF at 4136.324 kb on - strand, within yfiF at 4136.324 kb on - strand, within yfiF at 4136.481 kb on - strand, within yfiF at 4136.630 kb on + strand, within yfiF
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,134,380 - -2.8 4,134,430 - -0.4 4,134,587 - tapT OKFHMN_21325 0.18 -0.5 4,134,587 - tapT OKFHMN_21325 0.18 -0.2 4,134,591 - tapT OKFHMN_21325 0.19 -0.5 4,134,616 + tapT OKFHMN_21325 0.22 +0.1 4,134,617 - tapT OKFHMN_21325 0.22 +1.0 4,134,621 + tapT OKFHMN_21325 0.23 +0.3 4,134,621 + tapT OKFHMN_21325 0.23 +0.2 4,134,715 + tapT OKFHMN_21325 0.36 -1.6 4,134,716 - tapT OKFHMN_21325 0.36 -0.5 4,134,819 + tapT OKFHMN_21325 0.51 -0.4 4,134,919 + tapT OKFHMN_21325 0.66 -0.4 4,135,040 + tapT OKFHMN_21325 0.83 -3.1 4,135,041 - tapT OKFHMN_21325 0.83 +0.0 4,135,041 - tapT OKFHMN_21325 0.83 +0.2 4,135,121 - +1.7 4,135,490 - trxC OKFHMN_21330 0.62 +0.2 4,135,647 + +0.6 4,135,647 + +0.3 4,135,648 - +0.3 4,135,652 - +0.7 4,135,667 - -1.0 4,135,667 - +0.1 4,135,667 - +0.2 4,135,710 + -0.2 4,135,710 + +0.9 4,135,714 + +0.2 4,135,715 - +0.4 4,135,758 + +0.6 4,135,759 - -0.6 4,135,762 + +0.7 4,135,762 + +0.4 4,135,763 - +1.1 4,135,767 + +0.6 4,135,874 + +0.2 4,135,931 + +0.1 4,136,323 + yfiF OKFHMN_21335 0.45 +0.6 4,136,324 - yfiF OKFHMN_21335 0.45 +1.0 4,136,324 - yfiF OKFHMN_21335 0.45 -0.8 4,136,481 - yfiF OKFHMN_21335 0.60 +0.2 4,136,630 + yfiF OKFHMN_21335 0.75 +0.9
Or see this region's nucleotide sequence