Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_21005 and OKFHMN_21010 overlap by 26 nucleotides OKFHMN_21010 and OKFHMN_21015 overlap by 4 nucleotides OKFHMN_21015 and OKFHMN_21020 overlap by 4 nucleotides OKFHMN_21020 and OKFHMN_21025 are separated by 252 nucleotides
OKFHMN_21005: OKFHMN_21005 - endonuclease, at 4,084,383 to 4,084,949
_21005
OKFHMN_21010: OKFHMN_21010 - protein NinG, at 4,084,924 to 4,085,535
_21010
OKFHMN_21015: OKFHMN_21015 - Serine/threonine-protein phosphatase, at 4,085,532 to 4,086,197
_21015
OKFHMN_21020: OKFHMN_21020 - Antitermination protein Q, at 4,086,194 to 4,086,817
_21020
OKFHMN_21025: OKFHMN_21025 - Membrane protein, at 4,087,070 to 4,087,813
_21025
Position (kb) 4085
4086
4087 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4084.584 kb on + strand, within OKFHMN_21005 at 4084.586 kb on + strand, within OKFHMN_21005 at 4084.722 kb on - strand, within OKFHMN_21005 at 4084.861 kb on + strand, within OKFHMN_21005 at 4084.887 kb on + strand, within OKFHMN_21005 at 4084.890 kb on + strand, within OKFHMN_21005 at 4086.355 kb on + strand, within OKFHMN_21020 at 4086.391 kb on + strand, within OKFHMN_21020 at 4086.435 kb on - strand, within OKFHMN_21020 at 4086.466 kb on + strand, within OKFHMN_21020 at 4086.478 kb on - strand, within OKFHMN_21020 at 4086.580 kb on + strand, within OKFHMN_21020 at 4086.580 kb on + strand, within OKFHMN_21020 at 4086.581 kb on - strand, within OKFHMN_21020 at 4086.581 kb on - strand, within OKFHMN_21020 at 4086.607 kb on - strand, within OKFHMN_21020 at 4086.634 kb on + strand, within OKFHMN_21020 at 4086.693 kb on + strand, within OKFHMN_21020 at 4086.743 kb on + strand, within OKFHMN_21020 at 4086.744 kb on - strand, within OKFHMN_21020 at 4086.744 kb on - strand, within OKFHMN_21020 at 4086.844 kb on + strand at 4086.913 kb on - strand at 4086.951 kb on - strand at 4086.979 kb on + strand at 4087.003 kb on - strand at 4087.003 kb on - strand at 4087.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,084,584 + OKFHMN_21005 0.35 -2.1 4,084,586 + OKFHMN_21005 0.36 +0.6 4,084,722 - OKFHMN_21005 0.60 -0.1 4,084,861 + OKFHMN_21005 0.84 +0.9 4,084,887 + OKFHMN_21005 0.89 +0.6 4,084,890 + OKFHMN_21005 0.89 +0.3 4,086,355 + OKFHMN_21020 0.26 +0.4 4,086,391 + OKFHMN_21020 0.32 -1.7 4,086,435 - OKFHMN_21020 0.39 +0.6 4,086,466 + OKFHMN_21020 0.44 +0.2 4,086,478 - OKFHMN_21020 0.46 +0.5 4,086,580 + OKFHMN_21020 0.62 +0.3 4,086,580 + OKFHMN_21020 0.62 +1.1 4,086,581 - OKFHMN_21020 0.62 +0.5 4,086,581 - OKFHMN_21020 0.62 +0.4 4,086,607 - OKFHMN_21020 0.66 +0.8 4,086,634 + OKFHMN_21020 0.71 -1.4 4,086,693 + OKFHMN_21020 0.80 +0.4 4,086,743 + OKFHMN_21020 0.88 +0.5 4,086,744 - OKFHMN_21020 0.88 +0.6 4,086,744 - OKFHMN_21020 0.88 -0.3 4,086,844 + +0.2 4,086,913 - -1.3 4,086,951 - +2.9 4,086,979 + -0.8 4,087,003 - -1.2 4,087,003 - -0.8 4,087,003 - +1.5
Or see this region's nucleotide sequence