Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20965

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntxerD and OKFHMN_20965 are separated by 1 nucleotidesOKFHMN_20965 and OKFHMN_20970 overlap by 4 nucleotides OKFHMN_20960: xerD - site-specific integrase, at 4,076,258 to 4,077,463 xerD OKFHMN_20965: OKFHMN_20965 - integrase, at 4,077,465 to 4,078,778 _20965 OKFHMN_20970: OKFHMN_20970 - DNA-binding protein, at 4,078,775 to 4,080,406 _20970 Position (kb) 4077 4078 4079Strain fitness (log2 ratio) -2 -1 0 1 2at 4076.620 kb on - strand, within xerDat 4076.708 kb on - strand, within xerDat 4076.871 kb on + strand, within xerDat 4077.015 kb on + strand, within xerDat 4077.081 kb on + strand, within xerDat 4077.230 kb on + strand, within xerDat 4078.259 kb on + strand, within OKFHMN_20965at 4078.559 kb on - strand, within OKFHMN_20965at 4078.637 kb on + strand, within OKFHMN_20965at 4078.914 kb on + strandat 4078.919 kb on - strandat 4079.151 kb on + strand, within OKFHMN_20970at 4079.413 kb on - strand, within OKFHMN_20970at 4079.413 kb on - strand, within OKFHMN_20970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
4,076,620 - xerD OKFHMN_20960 0.30 -1.0
4,076,708 - xerD OKFHMN_20960 0.37 +0.3
4,076,871 + xerD OKFHMN_20960 0.51 +0.6
4,077,015 + xerD OKFHMN_20960 0.63 -2.3
4,077,081 + xerD OKFHMN_20960 0.68 +1.1
4,077,230 + xerD OKFHMN_20960 0.81 -0.5
4,078,259 + OKFHMN_20965 0.60 -0.0
4,078,559 - OKFHMN_20965 0.83 +0.9
4,078,637 + OKFHMN_20965 0.89 +1.3
4,078,914 + +0.5
4,078,919 - +1.9
4,079,151 + OKFHMN_20970 0.23 +0.7
4,079,413 - OKFHMN_20970 0.39 -0.2
4,079,413 - OKFHMN_20970 0.39 +0.4

Or see this region's nucleotide sequence