Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygeK and OKFHMN_19855 are separated by 18 nucleotides OKFHMN_19855 and ygeI are separated by 186 nucleotides ygeI and ygeH are separated by 166 nucleotides ygeH and ygeG are separated by 333 nucleotides
OKFHMN_19850: ygeK - Uncharacterized response regulatory protein YgeK, at 3,858,656 to 3,859,288
ygeK
OKFHMN_19855: OKFHMN_19855 - Transglycosylase SLT domain-containing protein, at 3,859,307 to 3,859,708
_19855
OKFHMN_19860: ygeI - Uncharacterized protein YgeI, at 3,859,895 to 3,860,113
ygeI
OKFHMN_19865: ygeH - HilA family transcriptional regulator YgeH, at 3,860,280 to 3,861,656
ygeH
OKFHMN_19870: ygeG - Uncharacterized protein YgeG, at 3,861,990 to 3,862,481
ygeG
Position (kb) 3860
3861
3862 Strain fitness (log2 ratio) -2
-1
0
1 at 3859.421 kb on - strand, within OKFHMN_19855 at 3859.469 kb on - strand, within OKFHMN_19855 at 3860.405 kb on - strand at 3860.405 kb on - strand at 3860.405 kb on - strand at 3860.528 kb on - strand, within ygeH at 3860.531 kb on - strand, within ygeH at 3861.434 kb on + strand, within ygeH at 3862.352 kb on - strand, within ygeG
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,859,421 - OKFHMN_19855 0.28 -0.3 3,859,469 - OKFHMN_19855 0.40 +0.0 3,860,405 - -1.9 3,860,405 - +0.6 3,860,405 - +0.2 3,860,528 - ygeH OKFHMN_19865 0.18 -0.7 3,860,531 - ygeH OKFHMN_19865 0.18 +0.3 3,861,434 + ygeH OKFHMN_19865 0.84 +1.1 3,862,352 - ygeG OKFHMN_19870 0.74 +1.1
Or see this region's nucleotide sequence