Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19750

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsctC and OKFHMN_19750 are separated by 4 nucleotidesOKFHMN_19750 and escV overlap by 8 nucleotides OKFHMN_19745: sctC - type III secretion system outer membrane ring subunit SctC, at 3,842,254 to 3,843,957 sctC OKFHMN_19750: OKFHMN_19750 - YopN/LcrE/InvE/MxiC type III secretion system gatekeeper, at 3,843,962 to 3,845,107 _19750 OKFHMN_19755: escV - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 3,845,100 to 3,847,160 escV Position (kb) 3843 3844 3845 3846Strain fitness (log2 ratio) -2 -1 0 1at 3843.148 kb on - strand, within sctCat 3843.194 kb on + strand, within sctCat 3843.199 kb on - strand, within sctCat 3843.387 kb on - strand, within sctCat 3843.411 kb on - strand, within sctCat 3843.495 kb on + strand, within sctCat 3843.620 kb on + strand, within sctCat 3843.829 kb on - strandat 3843.991 kb on - strandat 3844.030 kb on + strandat 3844.118 kb on - strand, within OKFHMN_19750at 3845.394 kb on - strand, within escVat 3845.427 kb on - strand, within escVat 3845.627 kb on - strand, within escVat 3845.721 kb on - strand, within escVat 3845.892 kb on - strand, within escV

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,843,148 - sctC OKFHMN_19745 0.52 -1.4
3,843,194 + sctC OKFHMN_19745 0.55 -0.6
3,843,199 - sctC OKFHMN_19745 0.55 +0.2
3,843,387 - sctC OKFHMN_19745 0.66 +0.7
3,843,411 - sctC OKFHMN_19745 0.68 -0.2
3,843,495 + sctC OKFHMN_19745 0.73 -0.1
3,843,620 + sctC OKFHMN_19745 0.80 -2.0
3,843,829 - -0.0
3,843,991 - +0.6
3,844,030 + -1.8
3,844,118 - OKFHMN_19750 0.14 -0.7
3,845,394 - escV OKFHMN_19755 0.14 +0.3
3,845,427 - escV OKFHMN_19755 0.16 +1.0
3,845,627 - escV OKFHMN_19755 0.26 +0.3
3,845,721 - escV OKFHMN_19755 0.30 +0.6
3,845,892 - escV OKFHMN_19755 0.38 +0.0

Or see this region's nucleotide sequence