Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18095

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargG and fMet_trna are separated by 347 nucleotidesfMet_trna and rimP are separated by 206 nucleotidesrimP and nusA are separated by 27 nucleotides OKFHMN_18090: argG - argininosuccinate synthase, at 3,513,918 to 3,515,261 argG OKFHMN_18095: fMet_trna - tRNA-fMet(cat), at 3,515,609 to 3,515,685 _trna OKFHMN_18100: rimP - ribosome maturation factor RimP, at 3,515,892 to 3,516,344 rimP OKFHMN_18105: nusA - Transcription termination/antitermination protein NusA, at 3,516,372 to 3,517,859 nusA Position (kb) 3515 3516Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3514.737 kb on - strand, within argGat 3514.775 kb on + strand, within argGat 3514.776 kb on - strand, within argGat 3514.776 kb on - strand, within argGat 3514.865 kb on + strand, within argGat 3514.867 kb on + strand, within argGat 3514.868 kb on - strand, within argGat 3514.889 kb on + strand, within argGat 3514.890 kb on - strand, within argGat 3515.104 kb on + strand, within argGat 3515.105 kb on - strand, within argGat 3515.138 kb on + strandat 3515.139 kb on - strandat 3515.139 kb on - strandat 3515.140 kb on + strandat 3515.140 kb on + strandat 3515.140 kb on + strandat 3515.140 kb on + strandat 3515.140 kb on + strandat 3515.141 kb on - strandat 3515.141 kb on - strandat 3515.141 kb on - strandat 3515.141 kb on - strandat 3515.223 kb on - strandat 3515.261 kb on + strandat 3515.278 kb on + strandat 3515.279 kb on - strandat 3515.279 kb on - strandat 3515.398 kb on + strandat 3515.408 kb on - strandat 3515.514 kb on - strandat 3515.514 kb on - strandat 3515.562 kb on + strandat 3515.562 kb on + strandat 3515.711 kb on + strandat 3516.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,514,737 - argG OKFHMN_18090 0.61 -3.4
3,514,775 + argG OKFHMN_18090 0.64 -1.6
3,514,776 - argG OKFHMN_18090 0.64 -3.7
3,514,776 - argG OKFHMN_18090 0.64 -1.4
3,514,865 + argG OKFHMN_18090 0.70 -2.0
3,514,867 + argG OKFHMN_18090 0.71 -2.4
3,514,868 - argG OKFHMN_18090 0.71 -4.9
3,514,889 + argG OKFHMN_18090 0.72 -4.9
3,514,890 - argG OKFHMN_18090 0.72 -4.8
3,515,104 + argG OKFHMN_18090 0.88 -5.4
3,515,105 - argG OKFHMN_18090 0.88 -5.2
3,515,138 + -2.3
3,515,139 - -3.4
3,515,139 - -4.9
3,515,140 + -2.9
3,515,140 + -4.4
3,515,140 + -5.1
3,515,140 + -4.7
3,515,140 + -3.6
3,515,141 - -6.1
3,515,141 - -2.7
3,515,141 - -5.2
3,515,141 - -4.8
3,515,223 - -4.3
3,515,261 + -4.6
3,515,278 + -4.8
3,515,279 - -0.3
3,515,279 - -2.2
3,515,398 + +0.2
3,515,408 - +2.1
3,515,514 - -0.1
3,515,514 - +0.3
3,515,562 + -1.6
3,515,562 + -0.2
3,515,711 + +0.9
3,516,342 + +0.8

Or see this region's nucleotide sequence