Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt degQ and zapG are separated by 153 nucleotides zapG and zapE are separated by 193 nucleotides
OKFHMN_17805: degQ - serine endoprotease DegQ, at 3,459,050 to 3,460,417
degQ
OKFHMN_17810: zapG - Z-ring associated protein ZapG, at 3,460,571 to 3,460,969
zapG
OKFHMN_17815: zapE - cell division protein ZapE, at 3,461,163 to 3,462,290
zapE
Position (kb) 3460
3461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3459.612 kb on - strand, within degQ at 3459.743 kb on + strand, within degQ at 3459.790 kb on + strand, within degQ at 3460.379 kb on + strand at 3460.380 kb on - strand at 3460.444 kb on - strand at 3460.511 kb on + strand at 3460.573 kb on - strand at 3460.591 kb on + strand at 3460.592 kb on - strand at 3460.750 kb on - strand, within zapG at 3460.761 kb on + strand, within zapG at 3460.892 kb on - strand, within zapG at 3460.956 kb on + strand at 3461.035 kb on + strand at 3461.036 kb on - strand at 3461.043 kb on + strand at 3461.044 kb on - strand at 3461.045 kb on + strand at 3461.089 kb on + strand at 3461.095 kb on - strand at 3461.150 kb on + strand at 3461.156 kb on + strand at 3461.190 kb on + strand at 3461.265 kb on - strand at 3461.285 kb on + strand, within zapE at 3461.286 kb on - strand, within zapE at 3461.286 kb on - strand, within zapE at 3461.317 kb on + strand, within zapE at 3461.383 kb on + strand, within zapE at 3461.383 kb on + strand, within zapE at 3461.384 kb on - strand, within zapE at 3461.384 kb on - strand, within zapE at 3461.385 kb on + strand, within zapE at 3461.385 kb on + strand, within zapE at 3461.385 kb on + strand, within zapE at 3461.385 kb on + strand, within zapE at 3461.385 kb on + strand, within zapE at 3461.386 kb on - strand, within zapE at 3461.386 kb on - strand, within zapE at 3461.386 kb on - strand, within zapE at 3461.386 kb on - strand, within zapE at 3461.386 kb on - strand, within zapE at 3461.387 kb on + strand, within zapE at 3461.387 kb on + strand, within zapE at 3461.387 kb on + strand, within zapE at 3461.387 kb on + strand, within zapE at 3461.388 kb on - strand, within zapE at 3461.388 kb on - strand, within zapE at 3461.388 kb on - strand, within zapE at 3461.388 kb on - strand, within zapE at 3461.388 kb on - strand, within zapE at 3461.388 kb on - strand, within zapE at 3461.388 kb on - strand, within zapE at 3461.401 kb on + strand, within zapE at 3461.402 kb on - strand, within zapE at 3461.402 kb on - strand, within zapE at 3461.509 kb on + strand, within zapE at 3461.510 kb on - strand, within zapE at 3461.562 kb on - strand, within zapE at 3461.562 kb on - strand, within zapE at 3461.773 kb on + strand, within zapE at 3461.810 kb on + strand, within zapE at 3461.811 kb on - strand, within zapE at 3461.878 kb on + strand, within zapE at 3461.878 kb on + strand, within zapE at 3461.878 kb on + strand, within zapE at 3461.878 kb on + strand, within zapE at 3461.878 kb on + strand, within zapE at 3461.878 kb on + strand, within zapE at 3461.879 kb on - strand, within zapE at 3461.879 kb on - strand, within zapE
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,459,612 - degQ OKFHMN_17805 0.41 -0.2 3,459,743 + degQ OKFHMN_17805 0.51 +0.3 3,459,790 + degQ OKFHMN_17805 0.54 -0.5 3,460,379 + +0.8 3,460,380 - +0.4 3,460,444 - -0.3 3,460,511 + +0.1 3,460,573 - -0.1 3,460,591 + +1.6 3,460,592 - +0.1 3,460,750 - zapG OKFHMN_17810 0.45 -2.9 3,460,761 + zapG OKFHMN_17810 0.48 -0.3 3,460,892 - zapG OKFHMN_17810 0.80 -1.9 3,460,956 + -0.2 3,461,035 + -1.3 3,461,036 - -0.5 3,461,043 + +0.8 3,461,044 - -0.7 3,461,045 + -0.3 3,461,089 + -2.0 3,461,095 - +1.0 3,461,150 + -0.3 3,461,156 + +0.0 3,461,190 + +0.4 3,461,265 - +0.3 3,461,285 + zapE OKFHMN_17815 0.11 +1.5 3,461,286 - zapE OKFHMN_17815 0.11 +0.3 3,461,286 - zapE OKFHMN_17815 0.11 +0.6 3,461,317 + zapE OKFHMN_17815 0.14 +0.9 3,461,383 + zapE OKFHMN_17815 0.20 +0.4 3,461,383 + zapE OKFHMN_17815 0.20 +0.3 3,461,384 - zapE OKFHMN_17815 0.20 +0.4 3,461,384 - zapE OKFHMN_17815 0.20 -0.1 3,461,385 + zapE OKFHMN_17815 0.20 +0.3 3,461,385 + zapE OKFHMN_17815 0.20 -0.7 3,461,385 + zapE OKFHMN_17815 0.20 -0.3 3,461,385 + zapE OKFHMN_17815 0.20 +0.3 3,461,385 + zapE OKFHMN_17815 0.20 -0.1 3,461,386 - zapE OKFHMN_17815 0.20 +0.3 3,461,386 - zapE OKFHMN_17815 0.20 -0.2 3,461,386 - zapE OKFHMN_17815 0.20 +0.8 3,461,386 - zapE OKFHMN_17815 0.20 -0.0 3,461,386 - zapE OKFHMN_17815 0.20 +0.3 3,461,387 + zapE OKFHMN_17815 0.20 +0.6 3,461,387 + zapE OKFHMN_17815 0.20 -0.5 3,461,387 + zapE OKFHMN_17815 0.20 +1.3 3,461,387 + zapE OKFHMN_17815 0.20 +0.5 3,461,388 - zapE OKFHMN_17815 0.20 -0.2 3,461,388 - zapE OKFHMN_17815 0.20 +0.5 3,461,388 - zapE OKFHMN_17815 0.20 -0.1 3,461,388 - zapE OKFHMN_17815 0.20 +0.0 3,461,388 - zapE OKFHMN_17815 0.20 -0.6 3,461,388 - zapE OKFHMN_17815 0.20 +1.8 3,461,388 - zapE OKFHMN_17815 0.20 +0.6 3,461,401 + zapE OKFHMN_17815 0.21 -0.0 3,461,402 - zapE OKFHMN_17815 0.21 +0.2 3,461,402 - zapE OKFHMN_17815 0.21 +0.7 3,461,509 + zapE OKFHMN_17815 0.31 +0.2 3,461,510 - zapE OKFHMN_17815 0.31 +0.2 3,461,562 - zapE OKFHMN_17815 0.35 +0.8 3,461,562 - zapE OKFHMN_17815 0.35 +0.5 3,461,773 + zapE OKFHMN_17815 0.54 -1.2 3,461,810 + zapE OKFHMN_17815 0.57 +0.1 3,461,811 - zapE OKFHMN_17815 0.57 -0.4 3,461,878 + zapE OKFHMN_17815 0.63 +0.7 3,461,878 + zapE OKFHMN_17815 0.63 -0.9 3,461,878 + zapE OKFHMN_17815 0.63 +0.2 3,461,878 + zapE OKFHMN_17815 0.63 +0.2 3,461,878 + zapE OKFHMN_17815 0.63 +0.3 3,461,878 + zapE OKFHMN_17815 0.63 +0.7 3,461,879 - zapE OKFHMN_17815 0.63 -0.9 3,461,879 - zapE OKFHMN_17815 0.63 -1.1
Or see this region's nucleotide sequence