Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fic and pabA are separated by 31 nucleotides pabA and yrfJ are separated by 80 nucleotides yrfJ and argD,dapC overlap by 49 nucleotides argD,dapC and yhfK are separated by 66 nucleotides
OKFHMN_17215: fic - putative adenosine monophosphate-protein transferase Fic, at 3,363,712 to 3,364,314
fic
OKFHMN_17220: pabA - aminodeoxychorismate synthase component 2, at 3,364,346 to 3,364,909
pabA
OKFHMN_17225: yrfJ - Protein YrfJ, at 3,364,990 to 3,365,043
yrfJ
OKFHMN_17230: argD,dapC - bifunctional acetylornithine/succinyldiaminopimelate transaminase, at 3,364,995 to 3,366,215
argD,dapC
OKFHMN_17235: yhfK - Uncharacterized protein YhfK, at 3,366,282 to 3,368,372
yhfK
Position (kb) 3364
3365
3366
3367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3364.091 kb on - strand, within fic at 3364.274 kb on + strand at 3364.317 kb on + strand at 3364.318 kb on - strand at 3364.358 kb on - strand at 3364.358 kb on - strand at 3364.359 kb on + strand at 3364.359 kb on + strand at 3364.359 kb on + strand at 3364.360 kb on - strand at 3364.363 kb on + strand at 3364.363 kb on + strand at 3364.367 kb on + strand at 3364.391 kb on + strand at 3364.391 kb on + strand at 3364.397 kb on + strand at 3364.619 kb on - strand, within pabA at 3364.672 kb on + strand, within pabA at 3364.672 kb on + strand, within pabA at 3364.687 kb on - strand, within pabA at 3364.712 kb on - strand, within pabA at 3364.972 kb on - strand at 3364.977 kb on + strand at 3364.978 kb on - strand at 3364.978 kb on - strand at 3365.055 kb on + strand at 3365.124 kb on + strand, within argD,dapC at 3365.153 kb on + strand, within argD,dapC at 3365.222 kb on + strand, within argD,dapC at 3365.267 kb on + strand, within argD,dapC at 3365.463 kb on + strand, within argD,dapC at 3365.677 kb on + strand, within argD,dapC at 3365.677 kb on + strand, within argD,dapC at 3365.678 kb on - strand, within argD,dapC at 3365.678 kb on - strand, within argD,dapC at 3365.716 kb on - strand, within argD,dapC at 3365.716 kb on - strand, within argD,dapC at 3365.847 kb on + strand, within argD,dapC at 3365.847 kb on + strand, within argD,dapC at 3365.900 kb on + strand, within argD,dapC at 3365.900 kb on + strand, within argD,dapC at 3365.901 kb on - strand, within argD,dapC at 3365.901 kb on - strand, within argD,dapC at 3365.901 kb on - strand, within argD,dapC at 3365.901 kb on - strand, within argD,dapC at 3365.904 kb on - strand, within argD,dapC at 3365.979 kb on + strand, within argD,dapC at 3366.043 kb on - strand, within argD,dapC at 3366.043 kb on - strand, within argD,dapC at 3366.043 kb on - strand, within argD,dapC at 3366.070 kb on - strand, within argD,dapC at 3366.091 kb on + strand, within argD,dapC at 3366.091 kb on + strand, within argD,dapC at 3366.217 kb on + strand at 3366.217 kb on + strand at 3366.218 kb on - strand at 3366.218 kb on - strand at 3366.218 kb on - strand at 3366.397 kb on - strand at 3366.490 kb on + strand at 3366.491 kb on - strand, within yhfK at 3366.538 kb on - strand, within yhfK at 3366.538 kb on - strand, within yhfK at 3366.541 kb on + strand, within yhfK at 3366.541 kb on + strand, within yhfK at 3366.541 kb on + strand, within yhfK at 3366.605 kb on + strand, within yhfK at 3366.605 kb on + strand, within yhfK at 3366.605 kb on + strand, within yhfK at 3366.605 kb on + strand, within yhfK at 3366.606 kb on - strand, within yhfK at 3366.606 kb on - strand, within yhfK at 3366.606 kb on - strand, within yhfK at 3366.648 kb on - strand, within yhfK at 3366.648 kb on - strand, within yhfK at 3366.704 kb on + strand, within yhfK at 3366.704 kb on + strand, within yhfK at 3366.707 kb on - strand, within yhfK at 3366.707 kb on - strand, within yhfK at 3366.716 kb on + strand, within yhfK at 3366.802 kb on + strand, within yhfK at 3366.810 kb on + strand, within yhfK at 3366.873 kb on - strand, within yhfK at 3366.888 kb on + strand, within yhfK at 3366.911 kb on + strand, within yhfK at 3366.928 kb on + strand, within yhfK at 3366.929 kb on - strand, within yhfK at 3366.929 kb on - strand, within yhfK at 3366.929 kb on - strand, within yhfK at 3366.962 kb on + strand, within yhfK at 3366.962 kb on + strand, within yhfK at 3366.964 kb on + strand, within yhfK at 3366.964 kb on + strand, within yhfK at 3366.964 kb on + strand, within yhfK at 3366.964 kb on + strand, within yhfK at 3366.964 kb on + strand, within yhfK at 3366.964 kb on + strand, within yhfK at 3366.964 kb on + strand, within yhfK at 3366.965 kb on - strand, within yhfK at 3366.965 kb on - strand, within yhfK at 3366.965 kb on - strand, within yhfK at 3366.975 kb on - strand, within yhfK at 3366.977 kb on + strand, within yhfK at 3366.978 kb on - strand, within yhfK at 3367.018 kb on - strand, within yhfK at 3367.024 kb on + strand, within yhfK at 3367.063 kb on + strand, within yhfK at 3367.064 kb on - strand, within yhfK
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,364,091 - fic OKFHMN_17215 0.63 +0.6 3,364,274 + -0.0 3,364,317 + +0.1 3,364,318 - +0.6 3,364,358 - +1.0 3,364,358 - -0.0 3,364,359 + +0.5 3,364,359 + -0.0 3,364,359 + -0.3 3,364,360 - -0.1 3,364,363 + -2.3 3,364,363 + -0.9 3,364,367 + +0.5 3,364,391 + +0.8 3,364,391 + -0.4 3,364,397 + +0.2 3,364,619 - pabA OKFHMN_17220 0.48 +0.5 3,364,672 + pabA OKFHMN_17220 0.58 +0.1 3,364,672 + pabA OKFHMN_17220 0.58 +0.4 3,364,687 - pabA OKFHMN_17220 0.60 -2.6 3,364,712 - pabA OKFHMN_17220 0.65 +0.1 3,364,972 - +0.3 3,364,977 + +1.0 3,364,978 - +0.5 3,364,978 - +0.7 3,365,055 + +1.0 3,365,124 + argD,dapC OKFHMN_17230 0.11 -0.4 3,365,153 + argD,dapC OKFHMN_17230 0.13 -0.2 3,365,222 + argD,dapC OKFHMN_17230 0.19 -1.2 3,365,267 + argD,dapC OKFHMN_17230 0.22 -0.8 3,365,463 + argD,dapC OKFHMN_17230 0.38 -0.2 3,365,677 + argD,dapC OKFHMN_17230 0.56 -0.5 3,365,677 + argD,dapC OKFHMN_17230 0.56 -0.9 3,365,678 - argD,dapC OKFHMN_17230 0.56 -0.5 3,365,678 - argD,dapC OKFHMN_17230 0.56 +1.1 3,365,716 - argD,dapC OKFHMN_17230 0.59 +1.8 3,365,716 - argD,dapC OKFHMN_17230 0.59 -0.9 3,365,847 + argD,dapC OKFHMN_17230 0.70 -0.4 3,365,847 + argD,dapC OKFHMN_17230 0.70 +0.3 3,365,900 + argD,dapC OKFHMN_17230 0.74 +0.1 3,365,900 + argD,dapC OKFHMN_17230 0.74 -0.1 3,365,901 - argD,dapC OKFHMN_17230 0.74 -0.2 3,365,901 - argD,dapC OKFHMN_17230 0.74 -0.1 3,365,901 - argD,dapC OKFHMN_17230 0.74 -0.3 3,365,901 - argD,dapC OKFHMN_17230 0.74 +0.5 3,365,904 - argD,dapC OKFHMN_17230 0.74 -0.5 3,365,979 + argD,dapC OKFHMN_17230 0.81 +0.1 3,366,043 - argD,dapC OKFHMN_17230 0.86 -0.5 3,366,043 - argD,dapC OKFHMN_17230 0.86 -0.2 3,366,043 - argD,dapC OKFHMN_17230 0.86 -0.1 3,366,070 - argD,dapC OKFHMN_17230 0.88 +0.5 3,366,091 + argD,dapC OKFHMN_17230 0.90 -0.8 3,366,091 + argD,dapC OKFHMN_17230 0.90 -1.1 3,366,217 + +0.0 3,366,217 + +0.3 3,366,218 - -0.4 3,366,218 - +2.4 3,366,218 - +0.5 3,366,397 - -0.5 3,366,490 + +0.6 3,366,491 - yhfK OKFHMN_17235 0.10 -0.5 3,366,538 - yhfK OKFHMN_17235 0.12 +0.3 3,366,538 - yhfK OKFHMN_17235 0.12 +0.5 3,366,541 + yhfK OKFHMN_17235 0.12 -0.6 3,366,541 + yhfK OKFHMN_17235 0.12 +2.5 3,366,541 + yhfK OKFHMN_17235 0.12 -0.7 3,366,605 + yhfK OKFHMN_17235 0.15 +0.7 3,366,605 + yhfK OKFHMN_17235 0.15 +0.5 3,366,605 + yhfK OKFHMN_17235 0.15 -0.5 3,366,605 + yhfK OKFHMN_17235 0.15 -0.6 3,366,606 - yhfK OKFHMN_17235 0.15 -0.7 3,366,606 - yhfK OKFHMN_17235 0.15 -0.4 3,366,606 - yhfK OKFHMN_17235 0.15 +0.1 3,366,648 - yhfK OKFHMN_17235 0.18 -0.9 3,366,648 - yhfK OKFHMN_17235 0.18 +0.4 3,366,704 + yhfK OKFHMN_17235 0.20 +0.1 3,366,704 + yhfK OKFHMN_17235 0.20 -1.9 3,366,707 - yhfK OKFHMN_17235 0.20 -0.2 3,366,707 - yhfK OKFHMN_17235 0.20 +0.4 3,366,716 + yhfK OKFHMN_17235 0.21 +0.3 3,366,802 + yhfK OKFHMN_17235 0.25 +0.9 3,366,810 + yhfK OKFHMN_17235 0.25 +0.7 3,366,873 - yhfK OKFHMN_17235 0.28 -0.1 3,366,888 + yhfK OKFHMN_17235 0.29 -0.9 3,366,911 + yhfK OKFHMN_17235 0.30 +0.9 3,366,928 + yhfK OKFHMN_17235 0.31 -0.5 3,366,929 - yhfK OKFHMN_17235 0.31 +0.4 3,366,929 - yhfK OKFHMN_17235 0.31 -0.4 3,366,929 - yhfK OKFHMN_17235 0.31 +0.2 3,366,962 + yhfK OKFHMN_17235 0.33 -0.1 3,366,962 + yhfK OKFHMN_17235 0.33 -0.3 3,366,964 + yhfK OKFHMN_17235 0.33 +1.0 3,366,964 + yhfK OKFHMN_17235 0.33 +1.0 3,366,964 + yhfK OKFHMN_17235 0.33 -0.1 3,366,964 + yhfK OKFHMN_17235 0.33 +0.7 3,366,964 + yhfK OKFHMN_17235 0.33 +0.2 3,366,964 + yhfK OKFHMN_17235 0.33 +0.7 3,366,964 + yhfK OKFHMN_17235 0.33 -0.3 3,366,965 - yhfK OKFHMN_17235 0.33 +0.4 3,366,965 - yhfK OKFHMN_17235 0.33 -0.1 3,366,965 - yhfK OKFHMN_17235 0.33 -0.6 3,366,975 - yhfK OKFHMN_17235 0.33 -0.0 3,366,977 + yhfK OKFHMN_17235 0.33 +0.2 3,366,978 - yhfK OKFHMN_17235 0.33 +0.0 3,367,018 - yhfK OKFHMN_17235 0.35 +0.5 3,367,024 + yhfK OKFHMN_17235 0.35 +0.1 3,367,063 + yhfK OKFHMN_17235 0.37 -0.7 3,367,064 - yhfK OKFHMN_17235 0.37 +0.3
Or see this region's nucleotide sequence