Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15695

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfaL and rfaC overlap by 4 nucleotidesrfaC and rfaF are separated by 3 nucleotidesrfaF and rfaD are separated by 9 nucleotides OKFHMN_15685: rfaL - O-antigen ligase RfaL, at 3,030,070 to 3,031,278 rfaL OKFHMN_15690: rfaC - lipopolysaccharide heptosyltransferase RfaC, at 3,031,275 to 3,032,267 rfaC OKFHMN_15695: rfaF - ADP-heptose--LPS heptosyltransferase RfaF, at 3,032,271 to 3,033,317 rfaF OKFHMN_15700: rfaD - ADP-glyceromanno-heptose 6-epimerase, at 3,033,327 to 3,034,259 rfaD Position (kb) 3032 3033 3034Strain fitness (log2 ratio) -2 -1 0 1 2at 3031.299 kb on - strandat 3031.309 kb on - strandat 3031.365 kb on - strandat 3031.780 kb on + strand, within rfaCat 3031.878 kb on - strand, within rfaCat 3032.022 kb on + strand, within rfaCat 3032.249 kb on + strandat 3032.292 kb on + strandat 3032.915 kb on - strand, within rfaFat 3032.958 kb on + strand, within rfaFat 3033.034 kb on - strand, within rfaFat 3033.054 kb on - strand, within rfaFat 3033.150 kb on - strand, within rfaFat 3033.155 kb on + strand, within rfaFat 3033.155 kb on + strand, within rfaFat 3033.186 kb on + strand, within rfaFat 3033.355 kb on + strandat 3033.995 kb on + strand, within rfaD

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,031,299 - -0.0
3,031,309 - -0.4
3,031,365 - -0.6
3,031,780 + rfaC OKFHMN_15690 0.51 -0.7
3,031,878 - rfaC OKFHMN_15690 0.61 +1.9
3,032,022 + rfaC OKFHMN_15690 0.75 +0.0
3,032,249 + -2.1
3,032,292 + -1.7
3,032,915 - rfaF OKFHMN_15695 0.62 -0.5
3,032,958 + rfaF OKFHMN_15695 0.66 -1.1
3,033,034 - rfaF OKFHMN_15695 0.73 -0.5
3,033,054 - rfaF OKFHMN_15695 0.75 -0.3
3,033,150 - rfaF OKFHMN_15695 0.84 -2.4
3,033,155 + rfaF OKFHMN_15695 0.84 +0.8
3,033,155 + rfaF OKFHMN_15695 0.84 -2.3
3,033,186 + rfaF OKFHMN_15695 0.87 -2.3
3,033,355 + +2.0
3,033,995 + rfaD OKFHMN_15700 0.72 -0.5

Or see this region's nucleotide sequence