Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15170

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_15160 and OKFHMN_15165 are separated by 147 nucleotidesOKFHMN_15165 and OKFHMN_15170 are separated by 277 nucleotidesOKFHMN_15170 and OKFHMN_15175 are separated by 15 nucleotides OKFHMN_15160: OKFHMN_15160 - hypothetical protein, at 2,934,065 to 2,934,718 _15160 OKFHMN_15165: OKFHMN_15165 - hypothetical protein, at 2,934,866 to 2,935,348 _15165 OKFHMN_15170: OKFHMN_15170 - hypothetical protein, at 2,935,626 to 2,935,940 _15170 OKFHMN_15175: OKFHMN_15175 - hypothetical protein, at 2,935,956 to 2,937,059 _15175 Position (kb) 2935 2936Strain fitness (log2 ratio) -1 0 1at 2934.723 kb on + strandat 2935.261 kb on + strand, within OKFHMN_15165at 2935.371 kb on + strandat 2935.452 kb on + strandat 2935.452 kb on + strandat 2935.453 kb on - strandat 2935.453 kb on - strandat 2935.462 kb on + strandat 2935.462 kb on + strandat 2935.577 kb on + strandat 2935.779 kb on + strand, within OKFHMN_15170at 2935.780 kb on - strand, within OKFHMN_15170at 2936.508 kb on + strand, within OKFHMN_15175at 2936.585 kb on + strand, within OKFHMN_15175at 2936.720 kb on + strand, within OKFHMN_15175at 2936.741 kb on - strand, within OKFHMN_15175at 2936.886 kb on - strand, within OKFHMN_15175at 2936.909 kb on + strand, within OKFHMN_15175

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,934,723 + +0.1
2,935,261 + OKFHMN_15165 0.82 +0.6
2,935,371 + +0.1
2,935,452 + -0.4
2,935,452 + +1.5
2,935,453 - -0.6
2,935,453 - -0.7
2,935,462 + -0.0
2,935,462 + -0.4
2,935,577 + -0.9
2,935,779 + OKFHMN_15170 0.49 +0.2
2,935,780 - OKFHMN_15170 0.49 +0.5
2,936,508 + OKFHMN_15175 0.50 -0.7
2,936,585 + OKFHMN_15175 0.57 -0.4
2,936,720 + OKFHMN_15175 0.69 -0.2
2,936,741 - OKFHMN_15175 0.71 +0.5
2,936,886 - OKFHMN_15175 0.84 -0.4
2,936,909 + OKFHMN_15175 0.86 -0.1

Or see this region's nucleotide sequence