Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14995

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyidC and rnpA are separated by 223 nucleotidesrnpA and rpmH are separated by 49 nucleotidesrpmH and ysdD are separated by 229 nucleotidesysdD and dnaA are separated by 296 nucleotides OKFHMN_14990: yidC - membrane protein insertase YidC, at 2,902,124 to 2,903,770 yidC OKFHMN_14995: rnpA - ribonuclease P protein component, at 2,903,994 to 2,904,320 rnpA OKFHMN_15000: rpmH - 50S ribosomal protein L34, at 2,904,370 to 2,904,510 rpmH OKFHMN_15005: ysdD - Protein YsdD, at 2,904,740 to 2,904,820 ysdD OKFHMN_15010: dnaA - chromosomal replication initiator protein DnaA, at 2,905,117 to 2,906,520 dnaA Position (kb) 2903 2904 2905Strain fitness (log2 ratio) -2 -1 0 1at 2903.962 kb on - strandat 2904.653 kb on + strandat 2904.693 kb on + strandat 2904.741 kb on + strandat 2904.741 kb on + strandat 2904.742 kb on - strandat 2904.743 kb on + strandat 2904.744 kb on - strandat 2904.797 kb on - strand, within ysdDat 2904.873 kb on + strandat 2904.873 kb on + strandat 2904.874 kb on - strandat 2905.001 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,903,962 - -2.5
2,904,653 + +0.1
2,904,693 + -0.6
2,904,741 + +1.1
2,904,741 + +0.3
2,904,742 - -0.1
2,904,743 + +0.2
2,904,744 - +0.4
2,904,797 - ysdD OKFHMN_15005 0.70 +0.1
2,904,873 + -1.0
2,904,873 + -1.2
2,904,874 - +0.2
2,905,001 + +0.7

Or see this region's nucleotide sequence