Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14005

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
2,700,548	+	fabY	OKFHMN_13995	0.55	-1.4
2,700,549	-	fabY	OKFHMN_13995	0.55	-0.3
2,700,654	-	fabY	OKFHMN_13995	0.66	-0.5
2,700,785	+	fabY	OKFHMN_13995	0.80	-0.1
2,700,786	-	fabY	OKFHMN_13995	0.80	-1.0
2,700,788	+	fabY	OKFHMN_13995	0.80	-0.2
2,700,788	+	fabY	OKFHMN_13995	0.80	+0.1
2,700,789	-	fabY	OKFHMN_13995	0.80	+1.2
2,700,790	+	fabY	OKFHMN_13995	0.80	-0.4
2,700,790	+	fabY	OKFHMN_13995	0.80	-2.2
2,700,791	-	fabY	OKFHMN_13995	0.80	-1.4
2,700,791	-	fabY	OKFHMN_13995	0.80	-0.7
2,700,816	-	fabY	OKFHMN_13995	0.83	-0.2
2,700,899	+				-1.0
2,700,899	+				+2.4
2,700,900	-				+0.7
2,700,926	-				+0.2
2,700,970	+				-3.4
2,700,970	+				-0.5
2,700,971	-				-0.2
2,700,971	-				-0.9
2,700,971	-				+0.2
2,700,974	+				-1.2
2,700,975	-				-0.7
2,700,975	-				-0.5
2,700,975	-				-0.7
2,701,134	+	dtd	OKFHMN_14000	0.26	-2.0
2,701,140	+	dtd	OKFHMN_14000	0.28	-0.4
2,701,140	+	dtd	OKFHMN_14000	0.28	-0.1
2,701,140	+	dtd	OKFHMN_14000	0.28	-1.4
2,701,140	+	dtd	OKFHMN_14000	0.28	-0.7
2,701,141	-	dtd	OKFHMN_14000	0.28	+0.4
2,701,141	-	dtd	OKFHMN_14000	0.28	+0.1
2,701,141	-	dtd	OKFHMN_14000	0.28	+0.3
2,701,141	-	dtd	OKFHMN_14000	0.28	-0.1
2,701,141	-	dtd	OKFHMN_14000	0.28	-1.1
2,701,445	+				-1.0
2,701,522	-				+0.3
2,701,545	+	yihY	OKFHMN_14005	0.11	-0.4
2,701,545	+	yihY	OKFHMN_14005	0.11	+0.2
2,701,546	-	yihY	OKFHMN_14005	0.11	+0.9
2,701,546	-	yihY	OKFHMN_14005	0.11	+0.1
2,701,632	+	yihY	OKFHMN_14005	0.21	-0.8
2,701,722	+	yihY	OKFHMN_14005	0.31	+0.1
2,701,736	+	yihY	OKFHMN_14005	0.32	+0.4
2,701,779	+	yihY	OKFHMN_14005	0.37	+0.2
2,701,803	+	yihY	OKFHMN_14005	0.40	+0.9
2,701,803	+	yihY	OKFHMN_14005	0.40	+0.4
2,701,839	-	yihY	OKFHMN_14005	0.44	-0.0
2,701,951	-	yihY	OKFHMN_14005	0.57	-0.1
2,701,962	+	yihY	OKFHMN_14005	0.58	-0.4
2,701,974	-	yihY	OKFHMN_14005	0.60	+0.1
2,702,056	-	yihY	OKFHMN_14005	0.69	-0.7
2,702,067	+	yihY	OKFHMN_14005	0.70	-0.7
2,702,068	-	yihY	OKFHMN_14005	0.70	+0.4
2,702,080	-	yihY	OKFHMN_14005	0.72	+0.2
2,702,113	+	yihY	OKFHMN_14005	0.76	+0.6
2,702,205	-	yihY	OKFHMN_14005	0.86	+1.2
2,702,232	+	yihY	OKFHMN_14005	0.89	+0.2
2,702,233	-	yihY	OKFHMN_14005	0.89	+0.9
2,702,289	+				+0.6
2,702,289	+				+0.0
2,702,325	+				+0.7
2,702,325	+				+0.5
2,702,326	-				-0.4
2,702,326	-				-0.1
2,702,360	+				+1.5
2,702,361	-				-0.6
2,702,361	-				-1.1
2,702,375	+				+1.9
2,702,396	+	yihX	OKFHMN_14010	0.13	+0.2
2,702,406	+	yihX	OKFHMN_14010	0.14	-0.9
2,702,406	+	yihX	OKFHMN_14010	0.14	+0.1
2,702,407	-	yihX	OKFHMN_14010	0.15	+0.7
2,702,408	+	yihX	OKFHMN_14010	0.15	-0.2
2,702,408	+	yihX	OKFHMN_14010	0.15	-0.8
2,702,409	-	yihX	OKFHMN_14010	0.15	+0.2
2,702,524	+	yihX	OKFHMN_14010	0.34	-0.1
2,702,524	+	yihX	OKFHMN_14010	0.34	+0.5
2,702,524	+	yihX	OKFHMN_14010	0.34	+0.3
2,702,524	+	yihX	OKFHMN_14010	0.34	-0.8
2,702,525	-	yihX	OKFHMN_14010	0.34	-0.1
2,702,528	+	yihX	OKFHMN_14010	0.35	-0.0
2,702,528	+	yihX	OKFHMN_14010	0.35	+1.3
2,702,528	+	yihX	OKFHMN_14010	0.35	+0.4
2,702,528	+	yihX	OKFHMN_14010	0.35	-1.0
2,702,528	+	yihX	OKFHMN_14010	0.35	-1.0
2,702,528	+	yihX	OKFHMN_14010	0.35	+0.2
2,702,529	-	yihX	OKFHMN_14010	0.35	+0.4
2,702,529	-	yihX	OKFHMN_14010	0.35	-0.3
2,702,529	-	yihX	OKFHMN_14010	0.35	+0.9
2,702,579	+	yihX	OKFHMN_14010	0.43	+0.8
2,702,579	+	yihX	OKFHMN_14010	0.43	-0.5
2,702,579	+	yihX	OKFHMN_14010	0.43	+0.8
2,702,579	+	yihX	OKFHMN_14010	0.43	+0.1
2,702,580	-	yihX	OKFHMN_14010	0.43	+0.7
2,702,594	+	yihX	OKFHMN_14010	0.46	-0.4
2,702,594	+	yihX	OKFHMN_14010	0.46	-1.6
2,702,636	+	yihX	OKFHMN_14010	0.53	+0.1
2,702,637	-	yihX	OKFHMN_14010	0.53	+0.2
2,702,707	+	yihX	OKFHMN_14010	0.65	-0.5
2,702,708	-	yihX	OKFHMN_14010	0.65	-0.4
2,702,708	-	yihX	OKFHMN_14010	0.65	+1.3
2,702,816	+	yihX	OKFHMN_14010	0.83	-2.3
2,702,910	-				-0.3
2,702,910	-				+0.1
2,702,911	+				+0.3
2,702,911	+				-0.1
2,702,912	-				-0.2
2,702,988	+				-0.1
2,702,989	-				-0.5
2,703,063	-				+0.2
2,703,156	+	csqR	OKFHMN_14015	0.18	-0.1
2,703,156	+	csqR	OKFHMN_14015	0.18	-1.1
2,703,156	+	csqR	OKFHMN_14015	0.18	+0.1
2,703,156	+	csqR	OKFHMN_14015	0.18	+0.3
2,703,157	-	csqR	OKFHMN_14015	0.18	-1.2
2,703,157	-	csqR	OKFHMN_14015	0.18	-1.0
2,703,157	-	csqR	OKFHMN_14015	0.18	-0.7
2,703,221	-	csqR	OKFHMN_14015	0.26	-0.1
2,703,288	+	csqR	OKFHMN_14015	0.34	-1.1
2,703,288	+	csqR	OKFHMN_14015	0.34	-1.4
2,703,289	-	csqR	OKFHMN_14015	0.35	+0.6