Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11695

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzorA and zorB are separated by 6 nucleotideszorB and zorE are separated by 3 nucleotideszorE and nanM are separated by 245 nucleotidesnanM and OKFHMN_11705 overlap by 14 nucleotides OKFHMN_11685: zorA - Zorya protein ZorA, at 2,237,855 to 2,239,507 zorA OKFHMN_11690: zorB - Zorya protein ZorB, at 2,239,514 to 2,240,221 zorB OKFHMN_11695: zorE - Zorya protein ZorE, at 2,240,225 to 2,241,328 zorE OKFHMN_11700: nanM - N-acetylneuraminic acid mutarotase, at 2,241,574 to 2,241,882 nanM OKFHMN_11705: OKFHMN_11705 - HNH endonuclease, at 2,241,869 to 2,242,720 _11705 Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -1 0 1 2 3at 2239.311 kb on + strand, within zorAat 2239.526 kb on - strandat 2239.631 kb on + strand, within zorBat 2239.702 kb on - strand, within zorBat 2240.095 kb on - strand, within zorBat 2240.329 kb on + strandat 2240.362 kb on + strand, within zorEat 2240.653 kb on + strand, within zorEat 2240.918 kb on + strand, within zorEat 2241.115 kb on + strand, within zorEat 2241.452 kb on + strandat 2241.461 kb on - strandat 2241.461 kb on - strandat 2241.465 kb on + strandat 2241.466 kb on - strandat 2241.480 kb on - strandat 2241.552 kb on + strandat 2241.553 kb on - strandat 2241.619 kb on + strand, within nanMat 2241.620 kb on - strand, within nanMat 2241.702 kb on - strand, within nanMat 2241.965 kb on + strand, within OKFHMN_11705at 2241.965 kb on + strand, within OKFHMN_11705at 2241.969 kb on + strand, within OKFHMN_11705at 2241.970 kb on - strand, within OKFHMN_11705at 2242.044 kb on + strand, within OKFHMN_11705at 2242.104 kb on + strand, within OKFHMN_11705at 2242.105 kb on - strand, within OKFHMN_11705at 2242.128 kb on + strand, within OKFHMN_11705at 2242.230 kb on - strand, within OKFHMN_11705at 2242.307 kb on - strand, within OKFHMN_11705

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,239,311 + zorA OKFHMN_11685 0.88 +0.0
2,239,526 - -0.2
2,239,631 + zorB OKFHMN_11690 0.17 -0.2
2,239,702 - zorB OKFHMN_11690 0.27 -0.6
2,240,095 - zorB OKFHMN_11690 0.82 +1.1
2,240,329 + +2.9
2,240,362 + zorE OKFHMN_11695 0.12 -0.1
2,240,653 + zorE OKFHMN_11695 0.39 +0.5
2,240,918 + zorE OKFHMN_11695 0.63 +0.0
2,241,115 + zorE OKFHMN_11695 0.81 -0.9
2,241,452 + +0.5
2,241,461 - +0.5
2,241,461 - +0.7
2,241,465 + +0.2
2,241,466 - +0.3
2,241,480 - +1.3
2,241,552 + +0.2
2,241,553 - +0.5
2,241,619 + nanM OKFHMN_11700 0.15 +0.2
2,241,620 - nanM OKFHMN_11700 0.15 +0.1
2,241,702 - nanM OKFHMN_11700 0.41 -0.4
2,241,965 + OKFHMN_11705 0.11 +0.6
2,241,965 + OKFHMN_11705 0.11 -0.1
2,241,969 + OKFHMN_11705 0.12 +1.1
2,241,970 - OKFHMN_11705 0.12 +0.8
2,242,044 + OKFHMN_11705 0.21 +1.2
2,242,104 + OKFHMN_11705 0.28 +0.1
2,242,105 - OKFHMN_11705 0.28 +0.0
2,242,128 + OKFHMN_11705 0.30 +0.7
2,242,230 - OKFHMN_11705 0.42 +1.1
2,242,307 - OKFHMN_11705 0.51 +0.3

Or see this region's nucleotide sequence