Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_09590 and OKFHMN_09595 overlap by 4 nucleotides OKFHMN_09595 and OKFHMN_09600 overlap by 4 nucleotides OKFHMN_09600 and yfdN overlap by 1 nucleotides yfdN and OKFHMN_09610 are separated by 2 nucleotides OKFHMN_09610 and ymfM are separated by 9 nucleotides
OKFHMN_09590: OKFHMN_09590 - Endodeoxyribonuclease RusA, at 1,791,996 to 1,792,385
_09590
OKFHMN_09595: OKFHMN_09595 - LexA family transcriptional regulator, at 1,792,382 to 1,792,708
_09595
OKFHMN_09600: OKFHMN_09600 - phage N-6-adenine-methyltransferase, at 1,792,705 to 1,793,358
_09600
OKFHMN_09605: yfdN - Uncharacterized protein YfdN, at 1,793,358 to 1,793,846
yfdN
OKFHMN_09610: OKFHMN_09610 - helix-turn-helix domain-containing protein, at 1,793,849 to 1,794,790
_09610
OKFHMN_09615: ymfM - Uncharacterized protein YmfM, at 1,794,800 to 1,795,138
ymfM
Position (kb) 1793
1794 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1792.535 kb on + strand, within OKFHMN_09595 at 1792.669 kb on + strand, within OKFHMN_09595 at 1792.842 kb on + strand, within OKFHMN_09600 at 1792.842 kb on + strand, within OKFHMN_09600 at 1792.842 kb on + strand, within OKFHMN_09600 at 1792.941 kb on + strand, within OKFHMN_09600 at 1793.000 kb on + strand, within OKFHMN_09600 at 1793.063 kb on + strand, within OKFHMN_09600 at 1793.063 kb on + strand, within OKFHMN_09600 at 1793.121 kb on + strand, within OKFHMN_09600 at 1793.247 kb on + strand, within OKFHMN_09600 at 1793.247 kb on + strand, within OKFHMN_09600 at 1793.345 kb on + strand at 1793.371 kb on + strand at 1793.521 kb on + strand, within yfdN at 1793.521 kb on + strand, within yfdN at 1793.724 kb on + strand, within yfdN at 1793.724 kb on + strand, within yfdN at 1793.880 kb on + strand at 1793.880 kb on + strand at 1794.045 kb on + strand, within OKFHMN_09610 at 1794.368 kb on + strand, within OKFHMN_09610 at 1794.575 kb on - strand, within OKFHMN_09610 at 1794.691 kb on + strand, within OKFHMN_09610 at 1794.715 kb on + strand at 1794.768 kb on + strand at 1794.768 kb on + strand at 1794.768 kb on + strand at 1794.768 kb on + strand at 1794.769 kb on - strand at 1794.769 kb on - strand at 1794.781 kb on + strand at 1794.801 kb on + strand at 1794.801 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,792,535 + OKFHMN_09595 0.47 -0.3 1,792,669 + OKFHMN_09595 0.88 -0.3 1,792,842 + OKFHMN_09600 0.21 +0.9 1,792,842 + OKFHMN_09600 0.21 +0.9 1,792,842 + OKFHMN_09600 0.21 +1.9 1,792,941 + OKFHMN_09600 0.36 -0.2 1,793,000 + OKFHMN_09600 0.45 +2.0 1,793,063 + OKFHMN_09600 0.55 +0.2 1,793,063 + OKFHMN_09600 0.55 +0.2 1,793,121 + OKFHMN_09600 0.64 +0.6 1,793,247 + OKFHMN_09600 0.83 +0.7 1,793,247 + OKFHMN_09600 0.83 -0.0 1,793,345 + +0.2 1,793,371 + +0.6 1,793,521 + yfdN OKFHMN_09605 0.33 +0.3 1,793,521 + yfdN OKFHMN_09605 0.33 -0.5 1,793,724 + yfdN OKFHMN_09605 0.75 +0.3 1,793,724 + yfdN OKFHMN_09605 0.75 +0.3 1,793,880 + -1.4 1,793,880 + +0.7 1,794,045 + OKFHMN_09610 0.21 +1.4 1,794,368 + OKFHMN_09610 0.55 +0.0 1,794,575 - OKFHMN_09610 0.77 -1.7 1,794,691 + OKFHMN_09610 0.89 +0.6 1,794,715 + +0.3 1,794,768 + -0.2 1,794,768 + -2.8 1,794,768 + -0.4 1,794,768 + +0.4 1,794,769 - -4.7 1,794,769 - +0.0 1,794,781 + +0.1 1,794,801 + -0.5 1,794,801 + +0.8
Or see this region's nucleotide sequence