Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07740

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhsA and OKFHMN_07740 are separated by 26 nucleotidesOKFHMN_07740 and tnp-ISAs1 are separated by 214 nucleotides OKFHMN_07735: rhsA - type IV secretion protein Rhs, at 1,405,768 to 1,407,102 rhsA OKFHMN_07740: OKFHMN_07740 - Immunity protein of metallopeptidase 4 toxin, at 1,407,129 to 1,407,350 _07740 OKFHMN_07745: tnp-ISAs1 - ISAs1 family transposase, at 1,407,565 to 1,408,701 tnp-ISAs1 Position (kb) 1407 1408Strain fitness (log2 ratio) -1 0 1at 1406.608 kb on + strand, within rhsAat 1406.686 kb on - strand, within rhsAat 1406.891 kb on + strand, within rhsAat 1407.702 kb on + strand, within tnp-ISAs1

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,406,608 + rhsA OKFHMN_07735 0.63 -0.7
1,406,686 - rhsA OKFHMN_07735 0.69 +0.3
1,406,891 + rhsA OKFHMN_07735 0.84 -0.1
1,407,702 + tnp-ISAs1 OKFHMN_07745 0.12 -0.9

Or see this region's nucleotide sequence