Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepA and hokE are separated by 916 nucleotides hokE and hokE are separated by 350 nucleotides hokE and ybdK are separated by 438 nucleotides
OKFHMN_07625: fepA - ferrienterobactin outer membrane transporter, at 1,379,152 to 1,381,392
fepA
OKFHMN_07635: hokE - type I toxin-antitoxin system toxin HokE, at 1,382,309 to 1,382,461
hokE
OKFHMN_07645: hokE - type I toxin-antitoxin system toxin HokE, at 1,382,812 to 1,382,964
hokE
OKFHMN_07655: ybdK - YbdK family carboxylate-amine ligase, at 1,383,403 to 1,384,521
ybdK
Position (kb)
1382
1383 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1381.315 kb on + strand at 1381.336 kb on + strand at 1381.336 kb on + strand at 1381.336 kb on + strand at 1381.336 kb on + strand at 1381.337 kb on - strand at 1381.342 kb on + strand at 1381.342 kb on + strand at 1381.343 kb on - strand at 1381.343 kb on - strand at 1381.344 kb on + strand at 1381.366 kb on + strand at 1381.367 kb on - strand at 1381.367 kb on - strand at 1381.367 kb on - strand at 1381.367 kb on - strand at 1381.368 kb on + strand at 1381.368 kb on + strand at 1381.369 kb on - strand at 1381.487 kb on + strand at 1381.576 kb on - strand at 1381.576 kb on - strand at 1381.581 kb on + strand at 1381.581 kb on + strand at 1381.672 kb on + strand at 1381.699 kb on - strand at 1381.741 kb on + strand at 1381.763 kb on - strand at 1381.764 kb on + strand at 1381.764 kb on + strand at 1381.765 kb on - strand at 1381.765 kb on - strand at 1381.938 kb on + strand at 1381.941 kb on + strand at 1382.072 kb on - strand at 1382.082 kb on + strand at 1382.165 kb on + strand at 1382.165 kb on + strand at 1382.165 kb on + strand at 1382.244 kb on - strand at 1382.350 kb on + strand, within hokE at 1382.354 kb on - strand, within hokE at 1382.354 kb on - strand, within hokE at 1382.467 kb on + strand at 1382.538 kb on - strand at 1382.543 kb on + strand at 1382.544 kb on - strand at 1382.701 kb on + strand at 1382.701 kb on + strand at 1382.856 kb on + strand, within hokE at 1382.872 kb on - strand, within hokE at 1383.367 kb on + strand at 1383.367 kb on + strand at 1383.368 kb on - strand at 1383.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,381,315 + +0.0 1,381,336 + +0.7 1,381,336 + -0.1 1,381,336 + +0.1 1,381,336 + +0.3 1,381,337 - -0.6 1,381,342 + -0.6 1,381,342 + -0.1 1,381,343 - -0.5 1,381,343 - +0.8 1,381,344 + +1.1 1,381,366 + +1.3 1,381,367 - -0.5 1,381,367 - -0.3 1,381,367 - -1.2 1,381,367 - -0.6 1,381,368 + +1.0 1,381,368 + -0.3 1,381,369 - +0.2 1,381,487 + +0.6 1,381,576 - +0.5 1,381,576 - +0.2 1,381,581 + +1.0 1,381,581 + -2.2 1,381,672 + +1.1 1,381,699 - -0.1 1,381,741 + +0.4 1,381,763 - +2.0 1,381,764 + +0.6 1,381,764 + +0.2 1,381,765 - +0.1 1,381,765 - +0.0 1,381,938 + +1.0 1,381,941 + +0.7 1,382,072 - +0.1 1,382,082 + +0.6 1,382,165 + +0.2 1,382,165 + +0.6 1,382,165 + +0.1 1,382,244 - +0.8 1,382,350 + hokE OKFHMN_07635 0.27 -0.8 1,382,354 - hokE OKFHMN_07635 0.29 -0.4 1,382,354 - hokE OKFHMN_07635 0.29 +1.1 1,382,467 + +0.2 1,382,538 - -0.5 1,382,543 + +1.2 1,382,544 - +0.3 1,382,701 + +0.1 1,382,701 + -2.4 1,382,856 + hokE OKFHMN_07645 0.29 +0.5 1,382,872 - hokE OKFHMN_07645 0.39 +0.1 1,383,367 + +0.9 1,383,367 + +0.3 1,383,368 - +0.1 1,383,402 + +0.1
Or see this region's nucleotide sequence