Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt entE and entC are separated by 9 nucleotides entC and fepB are separated by 188 nucleotides
OKFHMN_07570: entE - (2,3-dihydroxybenzoyl)adenylate synthase EntE, at 1,364,152 to 1,365,762
entE
OKFHMN_07575: entC - isochorismate synthase 1, at 1,365,772 to 1,366,947
entC
OKFHMN_07580: fepB - ferrienterobactin ABC transporter periplasmic binding protein, at 1,367,136 to 1,368,092
fepB
Position (kb) 1365
1366
1367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1364.849 kb on - strand, within entE at 1365.061 kb on - strand, within entE at 1365.140 kb on + strand, within entE at 1365.141 kb on - strand, within entE at 1365.143 kb on + strand, within entE at 1365.207 kb on - strand, within entE at 1365.262 kb on - strand, within entE at 1365.280 kb on - strand, within entE at 1365.553 kb on - strand, within entE at 1365.611 kb on + strand at 1366.348 kb on + strand, within entC at 1366.349 kb on - strand, within entC at 1366.412 kb on + strand, within entC at 1366.680 kb on + strand, within entC at 1366.680 kb on + strand, within entC at 1367.031 kb on - strand at 1367.031 kb on - strand at 1367.031 kb on - strand at 1367.087 kb on - strand at 1367.089 kb on - strand at 1367.198 kb on - strand at 1367.256 kb on - strand, within fepB at 1367.279 kb on + strand, within fepB at 1367.279 kb on + strand, within fepB at 1367.439 kb on + strand, within fepB at 1367.439 kb on + strand, within fepB at 1367.532 kb on + strand, within fepB at 1367.533 kb on - strand, within fepB at 1367.563 kb on + strand, within fepB at 1367.563 kb on + strand, within fepB at 1367.574 kb on + strand, within fepB at 1367.574 kb on + strand, within fepB at 1367.701 kb on + strand, within fepB at 1367.730 kb on + strand, within fepB at 1367.808 kb on - strand, within fepB at 1367.833 kb on + strand, within fepB at 1367.906 kb on - strand, within fepB at 1367.920 kb on + strand, within fepB at 1367.920 kb on + strand, within fepB at 1367.921 kb on - strand, within fepB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,364,849 - entE OKFHMN_07570 0.43 -0.4 1,365,061 - entE OKFHMN_07570 0.56 +0.0 1,365,140 + entE OKFHMN_07570 0.61 +0.0 1,365,141 - entE OKFHMN_07570 0.61 -1.5 1,365,143 + entE OKFHMN_07570 0.62 -0.6 1,365,207 - entE OKFHMN_07570 0.65 -0.5 1,365,262 - entE OKFHMN_07570 0.69 +0.2 1,365,280 - entE OKFHMN_07570 0.70 -1.5 1,365,553 - entE OKFHMN_07570 0.87 +0.4 1,365,611 + +0.9 1,366,348 + entC OKFHMN_07575 0.49 -0.9 1,366,349 - entC OKFHMN_07575 0.49 -0.9 1,366,412 + entC OKFHMN_07575 0.54 -0.8 1,366,680 + entC OKFHMN_07575 0.77 +0.1 1,366,680 + entC OKFHMN_07575 0.77 -1.1 1,367,031 - -0.9 1,367,031 - +0.5 1,367,031 - +0.6 1,367,087 - -1.6 1,367,089 - -2.9 1,367,198 - +1.4 1,367,256 - fepB OKFHMN_07580 0.13 +0.2 1,367,279 + fepB OKFHMN_07580 0.15 +0.2 1,367,279 + fepB OKFHMN_07580 0.15 -1.3 1,367,439 + fepB OKFHMN_07580 0.32 -1.7 1,367,439 + fepB OKFHMN_07580 0.32 -1.5 1,367,532 + fepB OKFHMN_07580 0.41 -1.7 1,367,533 - fepB OKFHMN_07580 0.41 -2.4 1,367,563 + fepB OKFHMN_07580 0.45 +0.4 1,367,563 + fepB OKFHMN_07580 0.45 -0.1 1,367,574 + fepB OKFHMN_07580 0.46 -0.3 1,367,574 + fepB OKFHMN_07580 0.46 +2.2 1,367,701 + fepB OKFHMN_07580 0.59 -1.7 1,367,730 + fepB OKFHMN_07580 0.62 -1.1 1,367,808 - fepB OKFHMN_07580 0.70 -1.2 1,367,833 + fepB OKFHMN_07580 0.73 -1.5 1,367,906 - fepB OKFHMN_07580 0.80 +0.5 1,367,920 + fepB OKFHMN_07580 0.82 +0.0 1,367,920 + fepB OKFHMN_07580 0.82 +0.4 1,367,921 - fepB OKFHMN_07580 0.82 -0.1
Or see this region's nucleotide sequence