Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modA and acrZ are separated by 166 nucleotides acrZ and modE are separated by 128 nucleotides modE and modF are separated by 67 nucleotides
OKFHMN_06695: modA - molybdate ABC transporter substrate-binding protein, at 1,193,539 to 1,194,312
modA
OKFHMN_06700: acrZ - multidrug efflux pump accessory protein AcrZ, at 1,194,479 to 1,194,628
acrZ
OKFHMN_06705: modE - molybdenum-dependent transcriptional regulator, at 1,194,757 to 1,195,545
modE
OKFHMN_06710: modF - molybdate ABC transporter ATP-binding protein ModF, at 1,195,613 to 1,197,085
modF
Position (kb) 1194
1195
1196 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1194.022 kb on - strand, within modA at 1194.120 kb on + strand, within modA at 1194.120 kb on + strand, within modA at 1194.325 kb on - strand at 1194.381 kb on + strand at 1194.382 kb on - strand at 1194.382 kb on - strand at 1194.406 kb on - strand at 1194.643 kb on - strand at 1194.644 kb on + strand at 1194.645 kb on - strand at 1194.645 kb on - strand at 1194.645 kb on - strand at 1194.657 kb on - strand at 1194.657 kb on - strand at 1194.756 kb on + strand at 1194.756 kb on + strand at 1194.757 kb on - strand at 1194.891 kb on + strand, within modE at 1194.891 kb on + strand, within modE at 1194.892 kb on - strand, within modE at 1194.913 kb on - strand, within modE at 1194.929 kb on + strand, within modE at 1194.930 kb on - strand, within modE at 1195.021 kb on + strand, within modE at 1195.065 kb on - strand, within modE at 1195.065 kb on - strand, within modE at 1195.206 kb on - strand, within modE at 1195.296 kb on - strand, within modE at 1195.374 kb on + strand, within modE at 1195.377 kb on + strand, within modE at 1195.378 kb on - strand, within modE at 1195.413 kb on - strand, within modE at 1195.683 kb on + strand at 1195.941 kb on + strand, within modF at 1195.941 kb on + strand, within modF at 1196.312 kb on - strand, within modF at 1196.420 kb on + strand, within modF at 1196.422 kb on + strand, within modF at 1196.441 kb on - strand, within modF at 1196.449 kb on + strand, within modF at 1196.449 kb on + strand, within modF at 1196.449 kb on + strand, within modF at 1196.517 kb on + strand, within modF
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,194,022 - modA OKFHMN_06695 0.62 +0.2 1,194,120 + modA OKFHMN_06695 0.75 -0.3 1,194,120 + modA OKFHMN_06695 0.75 +0.3 1,194,325 - +0.5 1,194,381 + +0.5 1,194,382 - -0.2 1,194,382 - +2.1 1,194,406 - +0.0 1,194,643 - +0.4 1,194,644 + -0.5 1,194,645 - +0.0 1,194,645 - -0.4 1,194,645 - -2.5 1,194,657 - -0.8 1,194,657 - -0.4 1,194,756 + +0.6 1,194,756 + +0.1 1,194,757 - +1.1 1,194,891 + modE OKFHMN_06705 0.17 +0.0 1,194,891 + modE OKFHMN_06705 0.17 -0.2 1,194,892 - modE OKFHMN_06705 0.17 -0.5 1,194,913 - modE OKFHMN_06705 0.20 -1.8 1,194,929 + modE OKFHMN_06705 0.22 +0.2 1,194,930 - modE OKFHMN_06705 0.22 +0.6 1,195,021 + modE OKFHMN_06705 0.33 +0.0 1,195,065 - modE OKFHMN_06705 0.39 -0.1 1,195,065 - modE OKFHMN_06705 0.39 +0.6 1,195,206 - modE OKFHMN_06705 0.57 +0.1 1,195,296 - modE OKFHMN_06705 0.68 +0.8 1,195,374 + modE OKFHMN_06705 0.78 +0.3 1,195,377 + modE OKFHMN_06705 0.79 +0.5 1,195,378 - modE OKFHMN_06705 0.79 +0.3 1,195,413 - modE OKFHMN_06705 0.83 +0.6 1,195,683 + +0.4 1,195,941 + modF OKFHMN_06710 0.22 -1.5 1,195,941 + modF OKFHMN_06710 0.22 +1.4 1,196,312 - modF OKFHMN_06710 0.47 +0.2 1,196,420 + modF OKFHMN_06710 0.55 -0.1 1,196,422 + modF OKFHMN_06710 0.55 -1.6 1,196,441 - modF OKFHMN_06710 0.56 -3.8 1,196,449 + modF OKFHMN_06710 0.57 -0.4 1,196,449 + modF OKFHMN_06710 0.57 +0.6 1,196,449 + modF OKFHMN_06710 0.57 +0.3 1,196,517 + modF OKFHMN_06710 0.61 -0.2
Or see this region's nucleotide sequence