Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_06465 and OKFHMN_06470 are separated by 5 nucleotides OKFHMN_06470 and OKFHMN_06475 are separated by 9 nucleotides OKFHMN_06475 and OKFHMN_06480 overlap by 1 nucleotides
OKFHMN_06465: OKFHMN_06465 - phage tail protein, at 1,155,166 to 1,155,909
_06465
OKFHMN_06470: OKFHMN_06470 - phage minor tail protein L, at 1,155,915 to 1,156,613
_06470
OKFHMN_06475: OKFHMN_06475 - phage tail protein, at 1,156,623 to 1,156,952
_06475
OKFHMN_06480: OKFHMN_06480 - phage tail tape measure protein, at 1,156,952 to 1,160,017
_06480
Position (kb) 1156
1157 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1156.439 kb on - strand, within OKFHMN_06470 at 1156.531 kb on - strand, within OKFHMN_06470 at 1156.531 kb on - strand, within OKFHMN_06470 at 1156.724 kb on - strand, within OKFHMN_06475 at 1156.971 kb on - strand at 1157.100 kb on + strand at 1157.159 kb on - strand at 1157.159 kb on - strand at 1157.271 kb on + strand, within OKFHMN_06480 at 1157.295 kb on + strand, within OKFHMN_06480 at 1157.295 kb on + strand, within OKFHMN_06480 at 1157.296 kb on - strand, within OKFHMN_06480 at 1157.404 kb on + strand, within OKFHMN_06480 at 1157.404 kb on + strand, within OKFHMN_06480 at 1157.405 kb on - strand, within OKFHMN_06480 at 1157.531 kb on - strand, within OKFHMN_06480 at 1157.592 kb on - strand, within OKFHMN_06480 at 1157.689 kb on + strand, within OKFHMN_06480 at 1157.689 kb on + strand, within OKFHMN_06480 at 1157.689 kb on + strand, within OKFHMN_06480 at 1157.690 kb on - strand, within OKFHMN_06480 at 1157.691 kb on + strand, within OKFHMN_06480 at 1157.743 kb on - strand, within OKFHMN_06480 at 1157.773 kb on - strand, within OKFHMN_06480 at 1157.798 kb on - strand, within OKFHMN_06480 at 1157.931 kb on - strand, within OKFHMN_06480
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,156,439 - OKFHMN_06470 0.75 -0.3 1,156,531 - OKFHMN_06470 0.88 +0.7 1,156,531 - OKFHMN_06470 0.88 -0.6 1,156,724 - OKFHMN_06475 0.31 -1.3 1,156,971 - +0.3 1,157,100 + -1.9 1,157,159 - -2.8 1,157,159 - -0.1 1,157,271 + OKFHMN_06480 0.10 -0.5 1,157,295 + OKFHMN_06480 0.11 -0.6 1,157,295 + OKFHMN_06480 0.11 +0.2 1,157,296 - OKFHMN_06480 0.11 -2.3 1,157,404 + OKFHMN_06480 0.15 +0.4 1,157,404 + OKFHMN_06480 0.15 -1.0 1,157,405 - OKFHMN_06480 0.15 -0.6 1,157,531 - OKFHMN_06480 0.19 -0.0 1,157,592 - OKFHMN_06480 0.21 +0.9 1,157,689 + OKFHMN_06480 0.24 -4.5 1,157,689 + OKFHMN_06480 0.24 -0.5 1,157,689 + OKFHMN_06480 0.24 -0.6 1,157,690 - OKFHMN_06480 0.24 -0.1 1,157,691 + OKFHMN_06480 0.24 +0.8 1,157,743 - OKFHMN_06480 0.26 +1.7 1,157,773 - OKFHMN_06480 0.27 +0.3 1,157,798 - OKFHMN_06480 0.28 -2.8 1,157,931 - OKFHMN_06480 0.32 +1.9
Or see this region's nucleotide sequence