Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05895

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntartP and artI are separated by 17 nucleotidesartI and artQ are separated by 6 nucleotidesartQ and artM overlap by 1 nucleotidesartM and OKFHMN_05905 overlap by 1 nucleotidesOKFHMN_05905 and artJ are separated by 153 nucleotides OKFHMN_05885: artP - arginine ABC transporter ATP-binding protein ArtP, at 1,040,943 to 1,041,671 artP OKFHMN_05890: artI - Putative ABC transporter arginine-binding protein 2, at 1,041,689 to 1,042,420 artI OKFHMN_05895: artQ - arginine ABC transporter permease ArtQ, at 1,042,427 to 1,043,143 artQ OKFHMN_05900: artM - arginine ABC transporter permease ArtM, at 1,043,143 to 1,043,811 artM OKFHMN_05905: OKFHMN_05905 - hypothetical protein, at 1,043,811 to 1,043,948 _05905 OKFHMN_05915: artJ - ABC transporter substrate-binding protein ArtJ, at 1,044,102 to 1,044,833 artJ Position (kb) 1042 1043 1044Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1041.428 kb on - strand, within artPat 1041.518 kb on + strand, within artPat 1041.596 kb on + strand, within artPat 1041.651 kb on - strandat 1041.999 kb on - strand, within artIat 1042.001 kb on + strand, within artIat 1042.040 kb on + strand, within artIat 1042.041 kb on - strand, within artIat 1042.090 kb on + strand, within artIat 1042.117 kb on + strand, within artIat 1042.200 kb on + strand, within artIat 1042.200 kb on + strand, within artIat 1042.398 kb on - strandat 1042.622 kb on - strand, within artQat 1042.673 kb on - strand, within artQat 1042.778 kb on + strand, within artQat 1042.867 kb on + strand, within artQat 1043.011 kb on + strand, within artQat 1043.033 kb on - strand, within artQat 1043.060 kb on + strand, within artQat 1043.293 kb on + strand, within artMat 1043.418 kb on - strand, within artMat 1043.473 kb on + strand, within artMat 1043.474 kb on - strand, within artMat 1043.594 kb on - strand, within artMat 1043.638 kb on + strand, within artMat 1043.646 kb on + strand, within artMat 1043.668 kb on + strand, within artMat 1043.695 kb on + strand, within artMat 1043.696 kb on - strand, within artMat 1043.727 kb on + strand, within artMat 1043.731 kb on + strand, within artMat 1043.809 kb on + strandat 1043.947 kb on - strandat 1044.070 kb on + strandat 1044.076 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,041,428 - artP OKFHMN_05885 0.67 -0.8
1,041,518 + artP OKFHMN_05885 0.79 -1.9
1,041,596 + artP OKFHMN_05885 0.90 +0.3
1,041,651 - +0.1
1,041,999 - artI OKFHMN_05890 0.42 +1.3
1,042,001 + artI OKFHMN_05890 0.43 -0.5
1,042,040 + artI OKFHMN_05890 0.48 -0.2
1,042,041 - artI OKFHMN_05890 0.48 -0.3
1,042,090 + artI OKFHMN_05890 0.55 +0.6
1,042,117 + artI OKFHMN_05890 0.58 +0.2
1,042,200 + artI OKFHMN_05890 0.70 +0.2
1,042,200 + artI OKFHMN_05890 0.70 -0.5
1,042,398 - -0.8
1,042,622 - artQ OKFHMN_05895 0.27 +2.1
1,042,673 - artQ OKFHMN_05895 0.34 +0.4
1,042,778 + artQ OKFHMN_05895 0.49 -0.0
1,042,867 + artQ OKFHMN_05895 0.61 -0.0
1,043,011 + artQ OKFHMN_05895 0.81 +0.8
1,043,033 - artQ OKFHMN_05895 0.85 -0.7
1,043,060 + artQ OKFHMN_05895 0.88 +0.2
1,043,293 + artM OKFHMN_05900 0.22 -0.4
1,043,418 - artM OKFHMN_05900 0.41 -1.6
1,043,473 + artM OKFHMN_05900 0.49 +0.4
1,043,474 - artM OKFHMN_05900 0.49 -3.3
1,043,594 - artM OKFHMN_05900 0.67 +0.7
1,043,638 + artM OKFHMN_05900 0.74 +0.3
1,043,646 + artM OKFHMN_05900 0.75 +0.7
1,043,668 + artM OKFHMN_05900 0.78 +0.0
1,043,695 + artM OKFHMN_05900 0.83 +0.4
1,043,696 - artM OKFHMN_05900 0.83 -1.7
1,043,727 + artM OKFHMN_05900 0.87 -1.0
1,043,731 + artM OKFHMN_05900 0.88 +0.9
1,043,809 + +0.3
1,043,947 - -0.1
1,044,070 + -0.1
1,044,076 + -2.3

Or see this region's nucleotide sequence