Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05665

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrssA and OKFHMN_05660 overlap by 4 nucleotidesOKFHMN_05660 and OKFHMN_05665 overlap by 4 nucleotidesOKFHMN_05665 and cah are separated by 110 nucleotides OKFHMN_05655: rssA - phospholipase, at 964,456 to 965,526 rssA OKFHMN_05660: OKFHMN_05660 - chemotaxis protein, at 965,523 to 966,428 _05660 OKFHMN_05665: OKFHMN_05665 - dGTPase, at 966,425 to 968,809 _05665 OKFHMN_05670: cah - calcium-binding autotransporter Cah, at 968,920 to 971,769 cah Position (kb) 966 967 968 969Strain fitness (log2 ratio) -1 0 1at 965.469 kb on - strandat 966.379 kb on - strandat 966.470 kb on - strandat 966.515 kb on - strandat 966.515 kb on - strandat 966.545 kb on - strandat 966.681 kb on + strand, within OKFHMN_05665at 966.725 kb on - strand, within OKFHMN_05665at 966.756 kb on + strand, within OKFHMN_05665at 966.899 kb on + strand, within OKFHMN_05665at 967.451 kb on - strand, within OKFHMN_05665at 967.451 kb on - strand, within OKFHMN_05665at 967.451 kb on - strand, within OKFHMN_05665at 967.507 kb on - strand, within OKFHMN_05665at 968.699 kb on - strandat 968.917 kb on + strandat 969.015 kb on + strandat 969.093 kb on + strandat 969.369 kb on - strand, within cahat 969.555 kb on + strand, within cahat 969.556 kb on - strand, within cahat 969.650 kb on + strand, within cahat 969.652 kb on + strand, within cahat 969.652 kb on + strand, within cahat 969.673 kb on - strand, within cahat 969.673 kb on - strand, within cah

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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965,469 - -0.1
966,379 - +0.6
966,470 - +0.3
966,515 - -0.6
966,515 - -1.6
966,545 - +0.8
966,681 + OKFHMN_05665 0.11 -0.7
966,725 - OKFHMN_05665 0.13 +0.7
966,756 + OKFHMN_05665 0.14 +0.1
966,899 + OKFHMN_05665 0.20 -1.1
967,451 - OKFHMN_05665 0.43 +0.9
967,451 - OKFHMN_05665 0.43 -0.6
967,451 - OKFHMN_05665 0.43 +0.7
967,507 - OKFHMN_05665 0.45 -0.7
968,699 - -0.7
968,917 + +0.0
969,015 + -1.6
969,093 + -0.7
969,369 - cah OKFHMN_05670 0.16 +0.4
969,555 + cah OKFHMN_05670 0.22 -0.5
969,556 - cah OKFHMN_05670 0.22 +0.6
969,650 + cah OKFHMN_05670 0.26 +0.7
969,652 + cah OKFHMN_05670 0.26 -1.4
969,652 + cah OKFHMN_05670 0.26 +1.2
969,673 - cah OKFHMN_05670 0.26 -0.1
969,673 - cah OKFHMN_05670 0.26 +0.3

Or see this region's nucleotide sequence