Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05360

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntssuD and ssuC are separated by 11 nucleotidesssuC and ssuB overlap by 4 nucleotidesssuB and pepN are separated by 42 nucleotides OKFHMN_05350: ssuD - FMNH2-dependent alkanesulfonate monooxygenase, at 890,708 to 891,853 ssuD OKFHMN_05355: ssuC - aliphatic sulfonate ABC transporter permease SsuC, at 891,865 to 892,656 ssuC OKFHMN_05360: ssuB - aliphatic sulfonates ABC transporter ATP-binding protein, at 892,653 to 893,420 ssuB OKFHMN_05365: pepN - aminopeptidase N, at 893,463 to 896,075 pepN Position (kb) 892 893 894Strain fitness (log2 ratio) -1 0 1 2at 891.851 kb on + strandat 892.346 kb on - strand, within ssuCat 892.407 kb on + strand, within ssuCat 892.407 kb on + strand, within ssuCat 892.548 kb on + strand, within ssuCat 892.652 kb on + strandat 892.652 kb on + strandat 892.702 kb on + strandat 892.949 kb on + strand, within ssuBat 892.968 kb on - strand, within ssuBat 893.465 kb on - strandat 893.570 kb on - strandat 893.610 kb on + strandat 893.835 kb on - strand, within pepNat 894.033 kb on - strand, within pepNat 894.085 kb on + strand, within pepNat 894.109 kb on - strand, within pepNat 894.297 kb on + strand, within pepNat 894.352 kb on + strand, within pepNat 894.352 kb on + strand, within pepN

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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891,851 + -0.8
892,346 - ssuC OKFHMN_05355 0.61 -0.9
892,407 + ssuC OKFHMN_05355 0.68 +0.9
892,407 + ssuC OKFHMN_05355 0.68 -0.8
892,548 + ssuC OKFHMN_05355 0.86 -0.1
892,652 + -0.3
892,652 + -0.3
892,702 + -0.9
892,949 + ssuB OKFHMN_05360 0.39 +2.0
892,968 - ssuB OKFHMN_05360 0.41 +0.1
893,465 - +0.6
893,570 - -1.3
893,610 + -0.5
893,835 - pepN OKFHMN_05365 0.14 -1.2
894,033 - pepN OKFHMN_05365 0.22 -0.6
894,085 + pepN OKFHMN_05365 0.24 -0.3
894,109 - pepN OKFHMN_05365 0.25 +0.2
894,297 + pepN OKFHMN_05365 0.32 +0.7
894,352 + pepN OKFHMN_05365 0.34 -0.4
894,352 + pepN OKFHMN_05365 0.34 -1.2

Or see this region's nucleotide sequence