Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccA and tusE are separated by 90 nucleotides tusE and yccX overlap by 4 nucleotides yccX and rlmI are separated by 109 nucleotides rlmI and hspQ are separated by 57 nucleotides hspQ and yccU are separated by 44 nucleotides
OKFHMN_05170: yccA - FtsH protease modulator YccA, at 855,279 to 855,938
yccA
OKFHMN_05175: tusE - sulfurtransferase TusE, at 856,029 to 856,358
tusE
OKFHMN_05180: yccX - acylphosphatase, at 856,355 to 856,633
yccX
OKFHMN_05185: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 856,743 to 857,918
rlmI
OKFHMN_05190: hspQ - heat shock protein HspQ, at 857,976 to 858,293
hspQ
OKFHMN_05195: yccU - Uncharacterized protein YccU, at 858,338 to 858,751
yccU
Position (kb) 856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 855.873 kb on + strand at 856.013 kb on + strand at 856.024 kb on + strand at 856.356 kb on + strand at 856.357 kb on - strand at 856.460 kb on + strand, within yccX at 856.470 kb on - strand, within yccX at 856.561 kb on - strand, within yccX at 856.727 kb on + strand at 856.728 kb on - strand at 856.735 kb on + strand at 856.735 kb on + strand at 856.824 kb on - strand at 857.032 kb on - strand, within rlmI at 857.072 kb on + strand, within rlmI at 857.072 kb on + strand, within rlmI at 857.337 kb on + strand, within rlmI at 857.582 kb on + strand, within rlmI at 857.770 kb on + strand, within rlmI at 857.867 kb on + strand at 857.886 kb on + strand at 857.942 kb on + strand at 857.944 kb on + strand at 858.170 kb on + strand, within hspQ at 858.170 kb on + strand, within hspQ at 858.174 kb on + strand, within hspQ at 858.193 kb on + strand, within hspQ at 858.340 kb on - strand at 858.482 kb on - strand, within yccU at 858.648 kb on + strand, within yccU at 858.649 kb on - strand, within yccU at 858.723 kb on - strand at 858.843 kb on + strand at 858.844 kb on - strand at 858.849 kb on + strand at 858.849 kb on + strand at 858.849 kb on + strand at 858.850 kb on - strand at 858.852 kb on - strand at 858.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 855,873 + +0.6 856,013 + +0.7 856,024 + -1.6 856,356 + +0.3 856,357 - -0.3 856,460 + yccX OKFHMN_05180 0.38 -0.6 856,470 - yccX OKFHMN_05180 0.41 +0.8 856,561 - yccX OKFHMN_05180 0.74 -0.2 856,727 + -3.3 856,728 - +0.2 856,735 + +0.2 856,735 + -0.8 856,824 - +0.0 857,032 - rlmI OKFHMN_05185 0.25 -0.6 857,072 + rlmI OKFHMN_05185 0.28 -0.2 857,072 + rlmI OKFHMN_05185 0.28 +1.5 857,337 + rlmI OKFHMN_05185 0.51 +0.5 857,582 + rlmI OKFHMN_05185 0.71 -0.9 857,770 + rlmI OKFHMN_05185 0.87 +0.4 857,867 + +0.9 857,886 + +0.3 857,942 + +0.7 857,944 + -0.1 858,170 + hspQ OKFHMN_05190 0.61 -0.1 858,170 + hspQ OKFHMN_05190 0.61 -3.3 858,174 + hspQ OKFHMN_05190 0.62 -0.0 858,193 + hspQ OKFHMN_05190 0.68 -0.4 858,340 - -1.2 858,482 - yccU OKFHMN_05195 0.35 -0.2 858,648 + yccU OKFHMN_05195 0.75 +2.0 858,649 - yccU OKFHMN_05195 0.75 +0.3 858,723 - -0.6 858,843 + -1.3 858,844 - +1.1 858,849 + -2.8 858,849 + -0.0 858,849 + +0.9 858,850 - +0.6 858,852 - -0.7 858,860 - -0.1
Or see this region's nucleotide sequence