Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_05075 and dnaC are separated by 21 nucleotides dnaC and OKFHMN_05085 are separated by 6 nucleotides OKFHMN_05085 and OKFHMN_05090 are separated by 78 nucleotides OKFHMN_05090 and OKFHMN_05095 are separated by 206 nucleotides
OKFHMN_05075: OKFHMN_05075 - DUF1627 domain-containing protein, at 843,639 to 844,409
_05075
OKFHMN_05080: dnaC - DNA replication protein DnaC, at 844,431 to 845,177
dnaC
OKFHMN_05085: OKFHMN_05085 - DNA-binding protein, at 845,184 to 846,275
_05085
OKFHMN_05090: OKFHMN_05090 - hypothetical protein, at 846,354 to 846,809
_05090
OKFHMN_05095: OKFHMN_05095 - Rha family transcriptional regulator, at 847,016 to 847,441
_05095
Position (kb) 845
846
847 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 844.194 kb on - strand, within OKFHMN_05075 at 844.294 kb on - strand, within OKFHMN_05075 at 844.482 kb on - strand at 844.615 kb on - strand, within dnaC at 844.627 kb on - strand, within dnaC at 844.812 kb on - strand, within dnaC at 844.952 kb on - strand, within dnaC at 845.142 kb on - strand at 845.363 kb on - strand, within OKFHMN_05085 at 845.748 kb on - strand, within OKFHMN_05085 at 846.040 kb on + strand, within OKFHMN_05085 at 846.041 kb on - strand, within OKFHMN_05085 at 846.041 kb on - strand, within OKFHMN_05085 at 846.045 kb on - strand, within OKFHMN_05085 at 846.072 kb on - strand, within OKFHMN_05085 at 846.139 kb on + strand, within OKFHMN_05085 at 846.139 kb on + strand, within OKFHMN_05085 at 846.152 kb on + strand, within OKFHMN_05085 at 846.216 kb on - strand at 846.311 kb on - strand at 846.391 kb on + strand at 846.487 kb on + strand, within OKFHMN_05090 at 846.807 kb on + strand at 846.996 kb on + strand at 847.102 kb on + strand, within OKFHMN_05095 at 847.130 kb on + strand, within OKFHMN_05095
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 844,194 - OKFHMN_05075 0.72 +0.1 844,294 - OKFHMN_05075 0.85 -0.6 844,482 - +0.3 844,615 - dnaC OKFHMN_05080 0.25 -0.1 844,627 - dnaC OKFHMN_05080 0.26 -2.9 844,812 - dnaC OKFHMN_05080 0.51 +0.6 844,952 - dnaC OKFHMN_05080 0.70 -0.8 845,142 - +0.1 845,363 - OKFHMN_05085 0.16 -1.0 845,748 - OKFHMN_05085 0.52 -0.5 846,040 + OKFHMN_05085 0.78 -2.8 846,041 - OKFHMN_05085 0.78 +0.7 846,041 - OKFHMN_05085 0.78 +0.1 846,045 - OKFHMN_05085 0.79 +1.4 846,072 - OKFHMN_05085 0.81 -0.7 846,139 + OKFHMN_05085 0.87 +0.2 846,139 + OKFHMN_05085 0.87 +0.6 846,152 + OKFHMN_05085 0.89 +0.2 846,216 - -2.4 846,311 - -0.1 846,391 + +0.1 846,487 + OKFHMN_05090 0.29 -1.5 846,807 + -0.7 846,996 + -1.3 847,102 + OKFHMN_05095 0.20 +0.1 847,130 + OKFHMN_05095 0.27 -0.2
Or see this region's nucleotide sequence