Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04810

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthyaB and hyaA overlap by 4 nucleotideshyaA and Ser_trna are separated by 425 nucleotidesSer_trna and OKFHMN_04820 are separated by 104 nucleotides OKFHMN_04805: hyaB - Ni/Fe-hydrogenase large subunit, at 801,859 to 803,652 hyaB OKFHMN_04810: hyaA - hydrogenase 1 small subunit, at 803,649 to 804,767 hyaA OKFHMN_04815: Ser_trna - tRNA-Ser(tga), at 805,193 to 805,280 _trna OKFHMN_04820: OKFHMN_04820 - hypothetical protein, at 805,385 to 805,567 _04820 Position (kb) 803 804 805Strain fitness (log2 ratio) -1 0 1at 802.894 kb on - strand, within hyaBat 803.078 kb on + strand, within hyaBat 803.326 kb on - strand, within hyaBat 803.693 kb on + strandat 803.694 kb on - strandat 804.069 kb on - strand, within hyaAat 804.069 kb on - strand, within hyaAat 804.089 kb on - strand, within hyaAat 804.148 kb on + strand, within hyaAat 804.148 kb on + strand, within hyaAat 804.148 kb on + strand, within hyaAat 804.149 kb on - strand, within hyaAat 804.149 kb on - strand, within hyaAat 804.152 kb on + strand, within hyaAat 804.420 kb on - strand, within hyaAat 804.433 kb on + strand, within hyaAat 804.434 kb on - strand, within hyaAat 804.434 kb on - strand, within hyaAat 804.698 kb on - strandat 805.001 kb on - strandat 805.334 kb on + strandat 805.357 kb on + strandat 805.493 kb on + strand, within OKFHMN_04820at 805.493 kb on + strand, within OKFHMN_04820at 805.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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802,894 - hyaB OKFHMN_04805 0.58 +0.4
803,078 + hyaB OKFHMN_04805 0.68 +0.1
803,326 - hyaB OKFHMN_04805 0.82 -1.3
803,693 + -1.2
803,694 - +0.6
804,069 - hyaA OKFHMN_04810 0.38 +1.1
804,069 - hyaA OKFHMN_04810 0.38 +0.3
804,089 - hyaA OKFHMN_04810 0.39 +0.6
804,148 + hyaA OKFHMN_04810 0.45 -0.1
804,148 + hyaA OKFHMN_04810 0.45 +0.1
804,148 + hyaA OKFHMN_04810 0.45 +0.4
804,149 - hyaA OKFHMN_04810 0.45 +0.8
804,149 - hyaA OKFHMN_04810 0.45 -1.5
804,152 + hyaA OKFHMN_04810 0.45 -0.3
804,420 - hyaA OKFHMN_04810 0.69 +0.4
804,433 + hyaA OKFHMN_04810 0.70 -1.1
804,434 - hyaA OKFHMN_04810 0.70 +0.5
804,434 - hyaA OKFHMN_04810 0.70 +0.9
804,698 - +1.2
805,001 - +0.6
805,334 + -0.3
805,357 + +0.6
805,493 + OKFHMN_04820 0.59 +1.3
805,493 + OKFHMN_04820 0.59 -0.0
805,689 - +0.0

Or see this region's nucleotide sequence