Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04650 and wrbA are separated by 371 nucleotides wrbA and yccJ are separated by 20 nucleotides yccJ and agp are separated by 37 nucleotides
OKFHMN_04650: OKFHMN_04650 - Stress-induced protein, KGG, repeat, at 769,486 to 769,593
_04650
OKFHMN_04655: wrbA - NAD(P)H:quinone oxidoreductase, at 769,965 to 770,561
wrbA
OKFHMN_04660: yccJ - Uncharacterized protein YccJ, at 770,582 to 770,809
yccJ
OKFHMN_04665: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 770,847 to 772,088
agp
Position (kb) 770
771 Strain fitness (log2 ratio) -2
-1
0
1 at 769.615 kb on - strand at 769.624 kb on - strand at 769.624 kb on - strand at 769.679 kb on - strand at 769.720 kb on - strand at 769.784 kb on - strand at 769.865 kb on + strand at 769.904 kb on - strand at 769.944 kb on + strand at 770.228 kb on + strand, within wrbA at 770.228 kb on + strand, within wrbA at 770.272 kb on + strand, within wrbA at 770.297 kb on + strand, within wrbA at 770.526 kb on + strand at 770.526 kb on + strand at 770.527 kb on - strand at 770.547 kb on - strand at 770.638 kb on + strand, within yccJ at 770.639 kb on - strand, within yccJ at 770.652 kb on + strand, within yccJ at 770.734 kb on - strand, within yccJ at 770.979 kb on - strand, within agp at 770.983 kb on - strand, within agp at 770.983 kb on - strand, within agp at 771.002 kb on - strand, within agp at 771.110 kb on - strand, within agp at 771.166 kb on - strand, within agp at 771.166 kb on - strand, within agp at 771.166 kb on - strand, within agp at 771.221 kb on - strand, within agp at 771.393 kb on + strand, within agp at 771.446 kb on - strand, within agp at 771.519 kb on - strand, within agp at 771.521 kb on - strand, within agp at 771.547 kb on + strand, within agp at 771.690 kb on - strand, within agp at 771.761 kb on - strand, within agp at 771.801 kb on + strand, within agp
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 769,615 - -0.1 769,624 - -1.9 769,624 - -0.6 769,679 - -1.4 769,720 - -0.9 769,784 - +1.6 769,865 + +0.3 769,904 - +0.2 769,944 + -2.7 770,228 + wrbA OKFHMN_04655 0.44 -0.1 770,228 + wrbA OKFHMN_04655 0.44 -1.4 770,272 + wrbA OKFHMN_04655 0.51 +1.1 770,297 + wrbA OKFHMN_04655 0.56 +0.7 770,526 + -0.1 770,526 + +0.2 770,527 - +0.5 770,547 - +0.1 770,638 + yccJ OKFHMN_04660 0.25 +0.6 770,639 - yccJ OKFHMN_04660 0.25 -1.2 770,652 + yccJ OKFHMN_04660 0.31 +0.8 770,734 - yccJ OKFHMN_04660 0.67 +0.5 770,979 - agp OKFHMN_04665 0.11 +1.0 770,983 - agp OKFHMN_04665 0.11 -1.8 770,983 - agp OKFHMN_04665 0.11 +0.7 771,002 - agp OKFHMN_04665 0.12 +1.7 771,110 - agp OKFHMN_04665 0.21 -0.5 771,166 - agp OKFHMN_04665 0.26 +0.8 771,166 - agp OKFHMN_04665 0.26 +0.3 771,166 - agp OKFHMN_04665 0.26 -0.7 771,221 - agp OKFHMN_04665 0.30 +1.2 771,393 + agp OKFHMN_04665 0.44 -1.3 771,446 - agp OKFHMN_04665 0.48 +0.4 771,519 - agp OKFHMN_04665 0.54 +0.5 771,521 - agp OKFHMN_04665 0.54 -0.2 771,547 + agp OKFHMN_04665 0.56 +0.3 771,690 - agp OKFHMN_04665 0.68 -0.1 771,761 - agp OKFHMN_04665 0.74 +1.2 771,801 + agp OKFHMN_04665 0.77 +1.1
Or see this region's nucleotide sequence