Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clsC and ymdB overlap by 59 nucleotides ymdB and OKFHMN_03820 are separated by 94 nucleotides OKFHMN_03820 and csgC are separated by 120 nucleotides csgC and csgA are separated by 58 nucleotides
OKFHMN_03810: clsC - cardiolipin synthase ClsC, at 609,189 to 610,670
clsC
OKFHMN_03815: ymdB - O-acetyl-ADP-ribose deacetylase, at 610,612 to 611,145
ymdB
OKFHMN_03820: OKFHMN_03820 - Uncharacterized protein YmdA, at 611,240 to 611,551
_03820
OKFHMN_03825: csgC - curli assembly protein CsgC, at 611,672 to 612,004
csgC
OKFHMN_03830: csgA - curlin major subunit CsgA, at 612,063 to 612,521
csgA
Position (kb) 611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.258 kb on + strand, within clsC at 610.465 kb on + strand, within clsC at 610.481 kb on + strand, within clsC at 610.646 kb on + strand at 610.684 kb on + strand, within ymdB at 610.832 kb on - strand, within ymdB at 611.113 kb on - strand at 611.134 kb on - strand at 611.157 kb on - strand at 611.180 kb on - strand at 611.242 kb on - strand at 611.242 kb on - strand at 611.242 kb on - strand at 611.248 kb on - strand at 611.248 kb on - strand at 611.248 kb on - strand at 611.877 kb on - strand, within csgC at 611.931 kb on + strand, within csgC at 611.931 kb on + strand, within csgC at 612.004 kb on + strand at 612.062 kb on - strand at 612.062 kb on - strand at 612.064 kb on + strand at 612.067 kb on + strand at 612.183 kb on - strand, within csgA at 612.224 kb on + strand, within csgA at 612.312 kb on - strand, within csgA at 612.312 kb on - strand, within csgA at 612.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 610,258 + clsC OKFHMN_03810 0.72 -0.8 610,465 + clsC OKFHMN_03810 0.86 -0.8 610,481 + clsC OKFHMN_03810 0.87 +0.1 610,646 + -0.2 610,684 + ymdB OKFHMN_03815 0.13 +0.5 610,832 - ymdB OKFHMN_03815 0.41 +1.2 611,113 - +0.5 611,134 - +0.4 611,157 - -0.1 611,180 - +1.9 611,242 - +0.5 611,242 - +0.4 611,242 - -0.5 611,248 - +1.2 611,248 - +1.6 611,248 - +0.9 611,877 - csgC OKFHMN_03825 0.62 -1.3 611,931 + csgC OKFHMN_03825 0.78 +0.3 611,931 + csgC OKFHMN_03825 0.78 +0.1 612,004 + +0.1 612,062 - -3.0 612,062 - +0.6 612,064 + +0.6 612,067 + +0.8 612,183 - csgA OKFHMN_03830 0.26 +0.3 612,224 + csgA OKFHMN_03830 0.35 -0.1 612,312 - csgA OKFHMN_03830 0.54 -0.1 612,312 - csgA OKFHMN_03830 0.54 +0.0 612,546 - -0.1
Or see this region's nucleotide sequence