Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03785

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmdtG and msyB are separated by 82 nucleotidesmsyB and yceK are separated by 0 nucleotidesyceK and mdoH are separated by 172 nucleotides OKFHMN_03775: mdtG - multidrug efflux MFS transporter MdtG, at 601,731 to 602,702 mdtG OKFHMN_03780: msyB - MysB family protein, at 602,785 to 603,159 msyB OKFHMN_03785: yceK - YceK/YidQ family lipoprotein, at 603,160 to 603,387 yceK OKFHMN_03795: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 603,560 to 606,073 mdoH Position (kb) 603 604Strain fitness (log2 ratio) -2 -1 0 1at 602.249 kb on + strand, within mdtGat 602.282 kb on - strand, within mdtGat 602.547 kb on - strand, within mdtGat 602.717 kb on + strandat 602.976 kb on - strand, within msyBat 603.032 kb on + strand, within msyBat 603.063 kb on + strand, within msyBat 603.069 kb on - strand, within msyBat 603.157 kb on + strandat 603.619 kb on - strandat 603.791 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
602,249 + mdtG OKFHMN_03775 0.53 +0.2
602,282 - mdtG OKFHMN_03775 0.57 -2.1
602,547 - mdtG OKFHMN_03775 0.84 +0.2
602,717 + +1.2
602,976 - msyB OKFHMN_03780 0.51 -0.5
603,032 + msyB OKFHMN_03780 0.66 -0.0
603,063 + msyB OKFHMN_03780 0.74 +0.8
603,069 - msyB OKFHMN_03780 0.76 +0.9
603,157 + +0.6
603,619 - +0.4
603,791 - -1.5

Or see this region's nucleotide sequence