Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgD and flgC are separated by 11 nucleotides flgC and flgB are separated by 3 nucleotides flgB and flgA are separated by 154 nucleotides flgA and flgM are separated by 75 nucleotides
OKFHMN_03665: flgD - flagellar hook assembly protein FlgD, at 584,414 to 585,109
flgD
OKFHMN_03670: flgC - flagellar basal body rod protein FlgC, at 585,121 to 585,525
flgC
OKFHMN_03675: flgB - flagellar basal body rod protein FlgB, at 585,529 to 585,945
flgB
OKFHMN_03680: flgA - flagellar basal body P-ring formation protein FlgA, at 586,100 to 586,759
flgA
OKFHMN_03685: flgM - anti-sigma-28 factor FlgM, at 586,835 to 587,128
flgM
Position (kb) 585
586 Strain fitness (log2 ratio) -2
-1
0
1 at 584.542 kb on + strand, within flgD at 584.543 kb on - strand, within flgD at 584.567 kb on + strand, within flgD at 584.575 kb on - strand, within flgD at 584.657 kb on - strand, within flgD at 584.887 kb on + strand, within flgD at 585.110 kb on - strand at 585.136 kb on - strand at 585.323 kb on - strand, within flgC at 585.545 kb on - strand at 585.681 kb on + strand, within flgB at 585.946 kb on - strand at 585.946 kb on - strand at 585.983 kb on - strand at 586.038 kb on - strand at 586.065 kb on + strand at 586.079 kb on + strand at 586.237 kb on + strand, within flgA at 586.243 kb on + strand, within flgA at 586.359 kb on + strand, within flgA at 586.366 kb on + strand, within flgA at 586.550 kb on - strand, within flgA at 586.710 kb on + strand at 586.789 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 584,542 + flgD OKFHMN_03665 0.18 +1.2 584,543 - flgD OKFHMN_03665 0.19 +1.1 584,567 + flgD OKFHMN_03665 0.22 -0.3 584,575 - flgD OKFHMN_03665 0.23 -0.2 584,657 - flgD OKFHMN_03665 0.35 +0.2 584,887 + flgD OKFHMN_03665 0.68 +0.8 585,110 - +0.5 585,136 - +0.1 585,323 - flgC OKFHMN_03670 0.50 -0.2 585,545 - +0.2 585,681 + flgB OKFHMN_03675 0.36 +0.3 585,946 - +0.7 585,946 - +0.5 585,983 - -1.8 586,038 - -1.2 586,065 + -0.9 586,079 + +0.4 586,237 + flgA OKFHMN_03680 0.21 +0.1 586,243 + flgA OKFHMN_03680 0.22 -1.3 586,359 + flgA OKFHMN_03680 0.39 +0.8 586,366 + flgA OKFHMN_03680 0.40 -2.5 586,550 - flgA OKFHMN_03680 0.68 +0.0 586,710 + -2.1 586,789 + +0.2
Or see this region's nucleotide sequence