Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03285

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_03265 and OKFHMN_03270 are separated by 50 nucleotidesOKFHMN_03270 and OKFHMN_03275 are separated by 4 nucleotidesOKFHMN_03275 and OKFHMN_03280 are separated by 75 nucleotidesOKFHMN_03280 and OKFHMN_03285 are separated by 37 nucleotidesOKFHMN_03285 and OKFHMN_03290 are separated by 147 nucleotides OKFHMN_03265: OKFHMN_03265 - lysozyme, at 517,208 to 517,741 _03265 OKFHMN_03270: OKFHMN_03270 - DUF1327 domain-containing protein, at 517,792 to 518,136 _03270 OKFHMN_03275: OKFHMN_03275 - holin, at 518,141 to 518,356 _03275 OKFHMN_03280: OKFHMN_03280 - DUF826 domain-containing protein, at 518,432 to 518,701 _03280 OKFHMN_03285: OKFHMN_03285 - DUF1378 domain-containing protein, at 518,739 to 518,921 _03285 OKFHMN_03290: OKFHMN_03290 - sialate O-acetylesterase, at 519,069 to 521,006 _03290 Position (kb) 518 519Strain fitness (log2 ratio) -1 0 1at 518.903 kb on + strandat 518.904 kb on - strandat 518.941 kb on + strandat 519.094 kb on - strandat 519.470 kb on + strand, within OKFHMN_03290

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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518,903 + -0.4
518,904 - +0.3
518,941 + -0.0
519,094 - -0.5
519,470 + OKFHMN_03290 0.21 +0.5

Or see this region's nucleotide sequence