Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02760

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleA and OKFHMN_02760 are separated by 339 nucleotidesOKFHMN_02760 and OKFHMN_02765 are separated by 351 nucleotidesOKFHMN_02765 and OKFHMN_02770 are separated by 1 nucleotides OKFHMN_02755: nleA - type III secretion system effector NleA, at 442,048 to 443,373 nleA OKFHMN_02760: OKFHMN_02760 - T3SS effector protein NleG8, at 443,713 to 444,048 _02760 OKFHMN_02765: OKFHMN_02765 - phage tail protein, at 444,400 to 444,669 _02765 OKFHMN_02770: OKFHMN_02770 - phage tail protein, at 444,671 to 445,984 _02770 Position (kb) 443 444 445Strain fitness (log2 ratio) -2 -1 0 1 2at 442.741 kb on - strand, within nleAat 442.807 kb on - strand, within nleAat 442.965 kb on + strand, within nleAat 442.982 kb on + strand, within nleAat 443.038 kb on - strand, within nleAat 443.728 kb on - strandat 443.870 kb on - strand, within OKFHMN_02760at 444.166 kb on + strandat 444.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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442,741 - nleA OKFHMN_02755 0.52 -1.0
442,807 - nleA OKFHMN_02755 0.57 -0.3
442,965 + nleA OKFHMN_02755 0.69 -0.8
442,982 + nleA OKFHMN_02755 0.70 -0.2
443,038 - nleA OKFHMN_02755 0.75 +2.1
443,728 - -1.9
443,870 - OKFHMN_02760 0.47 -1.4
444,166 + +0.7
444,649 - +0.1

Or see this region's nucleotide sequence