Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02570

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgpB and ribA are separated by 169 nucleotidesribA and acnA are separated by 63 nucleotides OKFHMN_02565: pgpB - phosphatidylglycerophosphatase B, at 404,114 to 404,878 pgpB OKFHMN_02570: ribA - GTP cyclohydrolase-2, at 405,048 to 405,638 ribA OKFHMN_02575: acnA - aconitate hydratase AcnA, at 405,702 to 408,377 acnA Position (kb) 405 406Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 404.234 kb on - strand, within pgpBat 404.237 kb on + strand, within pgpBat 404.238 kb on - strand, within pgpBat 404.896 kb on - strandat 404.910 kb on + strandat 405.637 kb on - strandat 405.714 kb on - strandat 405.727 kb on + strandat 406.131 kb on - strand, within acnAat 406.350 kb on - strand, within acnAat 406.462 kb on + strand, within acnAat 406.463 kb on - strand, within acnAat 406.487 kb on - strand, within acnAat 406.630 kb on + strand, within acnA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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404,234 - pgpB OKFHMN_02565 0.16 -0.1
404,237 + pgpB OKFHMN_02565 0.16 -0.3
404,238 - pgpB OKFHMN_02565 0.16 +0.1
404,896 - +2.1
404,910 + -0.4
405,637 - -2.9
405,714 - +0.5
405,727 + +0.3
406,131 - acnA OKFHMN_02575 0.16 -2.4
406,350 - acnA OKFHMN_02575 0.24 +0.0
406,462 + acnA OKFHMN_02575 0.28 -0.7
406,463 - acnA OKFHMN_02575 0.28 +0.6
406,487 - acnA OKFHMN_02575 0.29 -0.7
406,630 + acnA OKFHMN_02575 0.35 -1.2

Or see this region's nucleotide sequence