Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01795

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynbE and ldhA are separated by 207 nucleotidesldhA and hslJ are separated by 110 nucleotideshslJ and ydbJ overlap by 4 nucleotides OKFHMN_01790: ynbE - YdbH family protein, at 267,718 to 270,357 ynbE OKFHMN_01795: ldhA - D-lactate dehydrogenase, at 270,565 to 271,554 ldhA OKFHMN_01800: hslJ - heat shock protein HslJ, at 271,665 to 272,087 hslJ OKFHMN_01805: ydbJ - Uncharacterized protein YdbJ, at 272,084 to 272,350 ydbJ Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 269.728 kb on - strand, within ynbEat 269.741 kb on - strand, within ynbEat 270.344 kb on + strandat 270.456 kb on + strandat 270.456 kb on + strandat 270.456 kb on + strandat 270.532 kb on + strandat 270.988 kb on - strand, within ldhAat 270.991 kb on + strand, within ldhAat 270.992 kb on - strand, within ldhAat 271.065 kb on + strand, within ldhAat 271.594 kb on + strandat 271.753 kb on + strand, within hslJat 271.959 kb on - strand, within hslJat 272.064 kb on - strandat 272.262 kb on - strand, within ydbJat 272.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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269,728 - ynbE OKFHMN_01790 0.76 +0.9
269,741 - ynbE OKFHMN_01790 0.77 +0.8
270,344 + +0.3
270,456 + -0.5
270,456 + -1.5
270,456 + -3.1
270,532 + +0.3
270,988 - ldhA OKFHMN_01795 0.43 -0.4
270,991 + ldhA OKFHMN_01795 0.43 +0.5
270,992 - ldhA OKFHMN_01795 0.43 -0.1
271,065 + ldhA OKFHMN_01795 0.51 +1.1
271,594 + +1.9
271,753 + hslJ OKFHMN_01800 0.21 +0.4
271,959 - hslJ OKFHMN_01800 0.70 +0.2
272,064 - +0.6
272,262 - ydbJ OKFHMN_01805 0.67 +0.0
272,395 - -1.1

Or see this region's nucleotide sequence