Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01380

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddM and fdnI are separated by 227 nucleotidesfdnI and fdnH overlap by 8 nucleotidesfdnH and fdnG are separated by 12 nucleotides OKFHMN_01370: yddM - HigA family addiction module antitoxin, at 177,132 to 177,416 yddM OKFHMN_01375: fdnI - formate dehydrogenase-N subunit gamma, at 177,644 to 178,297 fdnI OKFHMN_01380: fdnH - formate dehydrogenase N subunit beta, at 178,290 to 179,174 fdnH OKFHMN_01385: fdnG - formate dehydrogenase-N subunit alpha, at 179,187 to 182,234 fdnG Position (kb) 178 179 180Strain fitness (log2 ratio) -1 0 1 2at 177.577 kb on + strandat 177.577 kb on + strandat 177.646 kb on - strandat 177.786 kb on + strand, within fdnIat 177.786 kb on + strand, within fdnIat 177.787 kb on - strand, within fdnIat 177.995 kb on - strand, within fdnIat 178.292 kb on - strandat 178.499 kb on - strand, within fdnHat 179.275 kb on - strandat 179.277 kb on - strandat 179.946 kb on - strand, within fdnGat 180.111 kb on - strand, within fdnGat 180.111 kb on - strand, within fdnGat 180.156 kb on + strand, within fdnG

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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177,577 + +0.6
177,577 + +0.1
177,646 - +0.0
177,786 + fdnI OKFHMN_01375 0.22 +0.2
177,786 + fdnI OKFHMN_01375 0.22 -1.0
177,787 - fdnI OKFHMN_01375 0.22 -0.1
177,995 - fdnI OKFHMN_01375 0.54 -0.3
178,292 - -0.6
178,499 - fdnH OKFHMN_01380 0.24 +0.8
179,275 - +0.5
179,277 - +1.5
179,946 - fdnG OKFHMN_01385 0.25 +1.9
180,111 - fdnG OKFHMN_01385 0.30 -0.6
180,111 - fdnG OKFHMN_01385 0.30 +0.2
180,156 + fdnG OKFHMN_01385 0.32 +0.6

Or see this region's nucleotide sequence