Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01365

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmaeA and adhP are separated by 133 nucleotidesadhP and yddM are separated by 145 nucleotidesyddM and fdnI are separated by 227 nucleotides OKFHMN_01360: maeA - malate dehydrogenase, at 174,145 to 175,842 maeA OKFHMN_01365: adhP - alcohol dehydrogenase AdhP, at 175,976 to 176,986 adhP OKFHMN_01370: yddM - HigA family addiction module antitoxin, at 177,132 to 177,416 yddM OKFHMN_01375: fdnI - formate dehydrogenase-N subunit gamma, at 177,644 to 178,297 fdnI Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1at 175.667 kb on + strand, within maeAat 175.975 kb on + strandat 175.976 kb on - strandat 176.082 kb on + strand, within adhPat 176.677 kb on - strand, within adhPat 177.191 kb on + strand, within yddMat 177.191 kb on + strand, within yddMat 177.577 kb on + strandat 177.577 kb on + strandat 177.646 kb on - strandat 177.786 kb on + strand, within fdnIat 177.786 kb on + strand, within fdnIat 177.787 kb on - strand, within fdnI

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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175,667 + maeA OKFHMN_01360 0.90 +0.9
175,975 + +0.1
175,976 - +0.7
176,082 + adhP OKFHMN_01365 0.10 -0.2
176,677 - adhP OKFHMN_01365 0.69 -1.9
177,191 + yddM OKFHMN_01370 0.21 -1.2
177,191 + yddM OKFHMN_01370 0.21 -2.1
177,577 + +0.6
177,577 + +0.1
177,646 - +0.0
177,786 + fdnI OKFHMN_01375 0.22 +0.2
177,786 + fdnI OKFHMN_01375 0.22 -1.0
177,787 - fdnI OKFHMN_01375 0.22 -0.1

Or see this region's nucleotide sequence